Gene : Phvul.003G178600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR15835:SF2 - NUCLEAR-INTERACTING PARTNER OF ALK Genomic Order:  1810
Name:  ? Phvul.003G178600 Secondary Identifier:  ? PAC:37145678
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G178600 0.5kb upstream 0.5kb upstream 5483 true Chr03: 40178291-40183773 Phaseolus vulgaris
Phvul.003G178600 0.5kb upstream 0.5kb upstream 500 false Chr03: 40183274-40183773 Phaseolus vulgaris
Phvul.003G178600 0.5kb downstream 0.5kb downstream 5483 true Chr03: 40177791-40183273 Phaseolus vulgaris
Phvul.003G178600 0.5kb downstream 0.5kb downstream 500 false Chr03: 40177791-40178290 Phaseolus vulgaris
Phvul.003G178600 1.0kb upstream 1.0kb upstream 5983 true Chr03: 40178291-40184273 Phaseolus vulgaris
Phvul.003G178600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40183274-40184273 Phaseolus vulgaris
Phvul.003G178600 1.0kb downstream 1.0kb downstream 5983 true Chr03: 40177291-40183273 Phaseolus vulgaris
Phvul.003G178600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40177291-40178290 Phaseolus vulgaris
Phvul.003G178600 2.0kb upstream 2.0kb upstream 6983 true Chr03: 40178291-40185273 Phaseolus vulgaris
Phvul.003G178600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40183274-40185273 Phaseolus vulgaris
Phvul.003G178600 2.0kb downstream 2.0kb downstream 6983 true Chr03: 40176291-40183273 Phaseolus vulgaris
Phvul.003G178600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40176291-40178290 Phaseolus vulgaris
Phvul.003G178600 5.0kb upstream 5.0kb upstream 9983 true Chr03: 40178291-40188273 Phaseolus vulgaris
Phvul.003G178600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40183274-40188273 Phaseolus vulgaris
Phvul.003G178600 5.0kb downstream 5.0kb downstream 9983 true Chr03: 40173291-40183273 Phaseolus vulgaris
Phvul.003G178600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40173291-40178290 Phaseolus vulgaris
Phvul.003G178600 10.0kb upstream 10.0kb upstream 14983 true Chr03: 40178291-40193273 Phaseolus vulgaris
Phvul.003G178600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40183274-40193273 Phaseolus vulgaris
Phvul.003G178600 10.0kb downstream 10.0kb downstream 14983 true Chr03: 40168291-40183273 Phaseolus vulgaris
Phvul.003G178600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40168291-40178290 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305599 5265 Fabidae View MSA
124062210 5270 Rosid View MSA
123740172 5271 Pentapetalae View MSA
122787275 5272 Eudicot View MSA
122048012 5273 Angiosperm View MSA
121349794 5274 Embryophyte View MSA
123428489 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.37136 0.0 12.6233   Low
cufflinks 3.78672 0.0 15.6262    
cufflinks 3.90376 0.0 30.7216    
cufflinks 2.98099 0.0 12.5524    
cufflinks 2.99488 0.0 11.2015    
cufflinks 4.7505 0.0 26.2794    
cufflinks 4.77557 0.0 16.1014    
cufflinks 5.74214 0.0 18.4441   High
cufflinks 2.71999 0.0 8.54909   Low
cufflinks 4.62596 0.0 15.6561    
cufflinks 3.81312 0.0 13.3499    

0 Strain