Gene : Phvul.003G216000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31500:SF7 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  2185
Name:  ? Phvul.003G216000 Secondary Identifier:  ? PAC:37145257
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G216000 0.5kb upstream 0.5kb upstream 5449 true Chr03: 44318579-44324027 Phaseolus vulgaris
Phvul.003G216000 0.5kb upstream 0.5kb upstream 500 false Chr03: 44323528-44324027 Phaseolus vulgaris
Phvul.003G216000 0.5kb downstream 0.5kb downstream 5449 true Chr03: 44318079-44323527 Phaseolus vulgaris
Phvul.003G216000 0.5kb downstream 0.5kb downstream 500 false Chr03: 44318079-44318578 Phaseolus vulgaris
Phvul.003G216000 1.0kb upstream 1.0kb upstream 5949 true Chr03: 44318579-44324527 Phaseolus vulgaris
Phvul.003G216000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44323528-44324527 Phaseolus vulgaris
Phvul.003G216000 1.0kb downstream 1.0kb downstream 5949 true Chr03: 44317579-44323527 Phaseolus vulgaris
Phvul.003G216000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44317579-44318578 Phaseolus vulgaris
Phvul.003G216000 2.0kb upstream 2.0kb upstream 6949 true Chr03: 44318579-44325527 Phaseolus vulgaris
Phvul.003G216000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44323528-44325527 Phaseolus vulgaris
Phvul.003G216000 2.0kb downstream 2.0kb downstream 6949 true Chr03: 44316579-44323527 Phaseolus vulgaris
Phvul.003G216000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44316579-44318578 Phaseolus vulgaris
Phvul.003G216000 5.0kb upstream 5.0kb upstream 9949 true Chr03: 44318579-44328527 Phaseolus vulgaris
Phvul.003G216000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44323528-44328527 Phaseolus vulgaris
Phvul.003G216000 5.0kb downstream 5.0kb downstream 9949 true Chr03: 44313579-44323527 Phaseolus vulgaris
Phvul.003G216000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44313579-44318578 Phaseolus vulgaris
Phvul.003G216000 10.0kb upstream 10.0kb upstream 14949 true Chr03: 44318579-44333527 Phaseolus vulgaris
Phvul.003G216000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44323528-44333527 Phaseolus vulgaris
Phvul.003G216000 10.0kb downstream 10.0kb downstream 14949 true Chr03: 44308579-44323527 Phaseolus vulgaris
Phvul.003G216000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44308579-44318578 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302466 5265 Fabidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.05157 0.0 3.58991   Low
cufflinks 1.78635 0.0 5.76494    
cufflinks 1.78323 0.0 5.77664    
cufflinks 1.56716 0.0 5.1433    
cufflinks 15.503 0.0 40.6439    
cufflinks 2.22794 0.0 7.0199    
cufflinks 73.4783 0.0 200.521 High High
cufflinks 42.1149 0.0 110.165 High High
cufflinks 92.8253 0.0 258.471 High High
cufflinks 7.64994 0.0 21.1371    
cufflinks 8.64471 0.0 23.5879    

0 Strain