Gene : Phvul.003G218000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10683:SF10 - TRANSALDOLASE-LIKE PROTEIN Genomic Order:  2205
Name:  ? Phvul.003G218000 Secondary Identifier:  ? PAC:37147153
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris NONOXIPENT-PWY Phaseolus vulgaris pathologic  
Pvulgaris PENTOSE-P-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-5723 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G218000 0.5kb upstream 0.5kb upstream 4957 true Chr03: 44600397-44605353 Phaseolus vulgaris
Phvul.003G218000 0.5kb upstream 0.5kb upstream 500 false Chr03: 44604854-44605353 Phaseolus vulgaris
Phvul.003G218000 0.5kb downstream 0.5kb downstream 4957 true Chr03: 44599897-44604853 Phaseolus vulgaris
Phvul.003G218000 0.5kb downstream 0.5kb downstream 500 false Chr03: 44599897-44600396 Phaseolus vulgaris
Phvul.003G218000 1.0kb upstream 1.0kb upstream 5457 true Chr03: 44600397-44605853 Phaseolus vulgaris
Phvul.003G218000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44604854-44605853 Phaseolus vulgaris
Phvul.003G218000 1.0kb downstream 1.0kb downstream 5457 true Chr03: 44599397-44604853 Phaseolus vulgaris
Phvul.003G218000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44599397-44600396 Phaseolus vulgaris
Phvul.003G218000 2.0kb upstream 2.0kb upstream 6457 true Chr03: 44600397-44606853 Phaseolus vulgaris
Phvul.003G218000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44604854-44606853 Phaseolus vulgaris
Phvul.003G218000 2.0kb downstream 2.0kb downstream 6457 true Chr03: 44598397-44604853 Phaseolus vulgaris
Phvul.003G218000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44598397-44600396 Phaseolus vulgaris
Phvul.003G218000 5.0kb upstream 5.0kb upstream 9457 true Chr03: 44600397-44609853 Phaseolus vulgaris
Phvul.003G218000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44604854-44609853 Phaseolus vulgaris
Phvul.003G218000 5.0kb downstream 5.0kb downstream 9457 true Chr03: 44595397-44604853 Phaseolus vulgaris
Phvul.003G218000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44595397-44600396 Phaseolus vulgaris
Phvul.003G218000 10.0kb upstream 10.0kb upstream 14457 true Chr03: 44600397-44614853 Phaseolus vulgaris
Phvul.003G218000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44604854-44614853 Phaseolus vulgaris
Phvul.003G218000 10.0kb downstream 10.0kb downstream 14457 true Chr03: 44590397-44604853 Phaseolus vulgaris
Phvul.003G218000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44590397-44600396 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305152 5265 Fabidae View MSA
124061321 5270 Rosid View MSA
123737527 5271 Pentapetalae View MSA
122787081 5272 Eudicot View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.3985 0.0 43.0974   Low
cufflinks 52.869 0.0 138.601 High High
cufflinks 30.8498 0.0 79.742    
cufflinks 65.9473 0.0 175.145 High High
cufflinks 26.7147 0.0 69.119    
cufflinks 34.8252 0.0 90.0897 High  
cufflinks 17.3331 0.0 45.4524   Low
cufflinks 18.4839 0.0 48.2841    
cufflinks 32.5844 0.0 84.2324 High  
cufflinks 17.0916 0.0 44.8813   Low
cufflinks 27.8094 0.0 71.9319    

0 Strain