Gene : Phvul.003G219600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10969:SF39 - AUTOPHAGY-RELATED PROTEIN 8F Genomic Order:  2223
Name:  ? Phvul.003G219600 Secondary Identifier:  ? PAC:37146920
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G219600 0.5kb upstream 0.5kb upstream 3912 true Chr03: 44794445-44798356 Phaseolus vulgaris
Phvul.003G219600 0.5kb upstream 0.5kb upstream 500 false Chr03: 44797857-44798356 Phaseolus vulgaris
Phvul.003G219600 0.5kb downstream 0.5kb downstream 3912 true Chr03: 44793945-44797856 Phaseolus vulgaris
Phvul.003G219600 0.5kb downstream 0.5kb downstream 500 false Chr03: 44793945-44794444 Phaseolus vulgaris
Phvul.003G219600 1.0kb upstream 1.0kb upstream 4412 true Chr03: 44794445-44798856 Phaseolus vulgaris
Phvul.003G219600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44797857-44798856 Phaseolus vulgaris
Phvul.003G219600 1.0kb downstream 1.0kb downstream 4412 true Chr03: 44793445-44797856 Phaseolus vulgaris
Phvul.003G219600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44793445-44794444 Phaseolus vulgaris
Phvul.003G219600 2.0kb upstream 2.0kb upstream 5412 true Chr03: 44794445-44799856 Phaseolus vulgaris
Phvul.003G219600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44797857-44799856 Phaseolus vulgaris
Phvul.003G219600 2.0kb downstream 2.0kb downstream 5412 true Chr03: 44792445-44797856 Phaseolus vulgaris
Phvul.003G219600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44792445-44794444 Phaseolus vulgaris
Phvul.003G219600 5.0kb upstream 5.0kb upstream 8412 true Chr03: 44794445-44802856 Phaseolus vulgaris
Phvul.003G219600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44797857-44802856 Phaseolus vulgaris
Phvul.003G219600 5.0kb downstream 5.0kb downstream 8412 true Chr03: 44789445-44797856 Phaseolus vulgaris
Phvul.003G219600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44789445-44794444 Phaseolus vulgaris
Phvul.003G219600 10.0kb upstream 10.0kb upstream 13412 true Chr03: 44794445-44807856 Phaseolus vulgaris
Phvul.003G219600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44797857-44807856 Phaseolus vulgaris
Phvul.003G219600 10.0kb downstream 10.0kb downstream 13412 true Chr03: 44784445-44797856 Phaseolus vulgaris
Phvul.003G219600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44784445-44794444 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309445 5265 Fabidae View MSA
124068042 5270 Rosid View MSA
123752408 5271 Pentapetalae View MSA
122791477 5272 Eudicot View MSA
122048918 5273 Angiosperm View MSA
121349541 5274 Embryophyte View MSA
123427174 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 247.103 0.0 689.526 High High
cufflinks 28.049 0.0 75.0695    
cufflinks 32.5309 0.0 85.9446    
cufflinks 49.6997 0.0 129.088 High  
cufflinks 37.638 0.0 99.3465 High  
cufflinks 17.8585 0.0 49.5702   Low
cufflinks 34.438 0.0 90.7474 High  
cufflinks 35.6481 0.0 93.4961 High  
cufflinks 42.9828 0.0 112.073 High  
cufflinks 24.6193 0.0 66.8482    
cufflinks 30.9694 0.0 82.6327    

0 Strain