Gene : Phvul.003G219400 P. vulgaris v2.1
Defline:  (1 of 2) 1.1.1.27 - L-lactate dehydrogenase / L-lactic dehydrogenase Genomic Order:  2221
Name:  ? Phvul.003G219400 Secondary Identifier:  ? PAC:37147164
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-5481 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G219400 0.5kb upstream 0.5kb upstream 2369 true Chr03: 44785985-44788353 Phaseolus vulgaris
Phvul.003G219400 0.5kb upstream 0.5kb upstream 500 false Chr03: 44787854-44788353 Phaseolus vulgaris
Phvul.003G219400 0.5kb downstream 0.5kb downstream 2369 true Chr03: 44785485-44787853 Phaseolus vulgaris
Phvul.003G219400 0.5kb downstream 0.5kb downstream 500 false Chr03: 44785485-44785984 Phaseolus vulgaris
Phvul.003G219400 1.0kb upstream 1.0kb upstream 2869 true Chr03: 44785985-44788853 Phaseolus vulgaris
Phvul.003G219400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44787854-44788853 Phaseolus vulgaris
Phvul.003G219400 1.0kb downstream 1.0kb downstream 2869 true Chr03: 44784985-44787853 Phaseolus vulgaris
Phvul.003G219400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44784985-44785984 Phaseolus vulgaris
Phvul.003G219400 2.0kb upstream 2.0kb upstream 3869 true Chr03: 44785985-44789853 Phaseolus vulgaris
Phvul.003G219400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44787854-44789853 Phaseolus vulgaris
Phvul.003G219400 2.0kb downstream 2.0kb downstream 3869 true Chr03: 44783985-44787853 Phaseolus vulgaris
Phvul.003G219400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44783985-44785984 Phaseolus vulgaris
Phvul.003G219400 5.0kb upstream 5.0kb upstream 6869 true Chr03: 44785985-44792853 Phaseolus vulgaris
Phvul.003G219400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44787854-44792853 Phaseolus vulgaris
Phvul.003G219400 5.0kb downstream 5.0kb downstream 6869 true Chr03: 44780985-44787853 Phaseolus vulgaris
Phvul.003G219400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44780985-44785984 Phaseolus vulgaris
Phvul.003G219400 10.0kb upstream 10.0kb upstream 11869 true Chr03: 44785985-44797853 Phaseolus vulgaris
Phvul.003G219400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44787854-44797853 Phaseolus vulgaris
Phvul.003G219400 10.0kb downstream 10.0kb downstream 11869 true Chr03: 44775985-44787853 Phaseolus vulgaris
Phvul.003G219400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44775985-44785984 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297263 5265 Fabidae View MSA
124064441 5270 Rosid View MSA
123739146 5271 Pentapetalae View MSA
122785845 5272 Eudicot View MSA
122045770 5273 Angiosperm View MSA
121350532 5274 Embryophyte View MSA
123381776 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.0 0.0 93.1544 High  
cufflinks 74.1615 0.0 198.167 High  
cufflinks 20.3032 0.0 52.9695   Low
cufflinks 69.7925 0.0 187.132 High  
cufflinks 80.6115 0.0 218.766 High High
cufflinks 40.3825 0.0 104.629 High  
cufflinks 40.7446 0.0 105.787 High  
cufflinks 33.4503 0.0 86.4759 High  
cufflinks 49.0379 0.0 128.064 High  
cufflinks 43.8014 0.0 113.753 High  
cufflinks 91.6419 0.0 250.808 High High

0 Strain