Gene : Phvul.003G203500 P. vulgaris v2.1
Defline:  (1 of 3) 2.6.1.27 - Tryptophan transaminase / Tryptophan aminotransferase Genomic Order:  2056
Name:  ? Phvul.003G203500 Secondary Identifier:  ? PAC:37144423
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWYDQC-4 Phaseolus vulgaris pathologic  

Genomics

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Gene Structure Displayer

Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G203500 0.5kb upstream 0.5kb upstream 7728 true Chr03: 42924782-42932509 Phaseolus vulgaris
Phvul.003G203500 0.5kb upstream 0.5kb upstream 500 false Chr03: 42924782-42925281 Phaseolus vulgaris
Phvul.003G203500 0.5kb downstream 0.5kb downstream 7728 true Chr03: 42925282-42933009 Phaseolus vulgaris
Phvul.003G203500 0.5kb downstream 0.5kb downstream 500 false Chr03: 42932510-42933009 Phaseolus vulgaris
Phvul.003G203500 1.0kb upstream 1.0kb upstream 8228 true Chr03: 42924282-42932509 Phaseolus vulgaris
Phvul.003G203500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42924282-42925281 Phaseolus vulgaris
Phvul.003G203500 1.0kb downstream 1.0kb downstream 8228 true Chr03: 42925282-42933509 Phaseolus vulgaris
Phvul.003G203500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42932510-42933509 Phaseolus vulgaris
Phvul.003G203500 2.0kb upstream 2.0kb upstream 9228 true Chr03: 42923282-42932509 Phaseolus vulgaris
Phvul.003G203500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42923282-42925281 Phaseolus vulgaris
Phvul.003G203500 2.0kb downstream 2.0kb downstream 9228 true Chr03: 42925282-42934509 Phaseolus vulgaris
Phvul.003G203500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42932510-42934509 Phaseolus vulgaris
Phvul.003G203500 5.0kb upstream 5.0kb upstream 12228 true Chr03: 42920282-42932509 Phaseolus vulgaris
Phvul.003G203500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42920282-42925281 Phaseolus vulgaris
Phvul.003G203500 5.0kb downstream 5.0kb downstream 12228 true Chr03: 42925282-42937509 Phaseolus vulgaris
Phvul.003G203500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42932510-42937509 Phaseolus vulgaris
Phvul.003G203500 10.0kb upstream 10.0kb upstream 17228 true Chr03: 42915282-42932509 Phaseolus vulgaris
Phvul.003G203500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42915282-42925281 Phaseolus vulgaris
Phvul.003G203500 10.0kb downstream 10.0kb downstream 17228 true Chr03: 42925282-42942509 Phaseolus vulgaris
Phvul.003G203500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42932510-42942509 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311428 5265 Fabidae View MSA
124065149 5270 Rosid View MSA
123746345 5271 Pentapetalae View MSA
122790946 5272 Eudicot View MSA
122048062 5273 Angiosperm View MSA
121350160 5274 Embryophyte View MSA
123381598 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.428004 0.0 2.62897   Low
cufflinks 0.489401 0.0 3.79346 Low Low
cufflinks 4.99727 0.0 26.2288    
cufflinks 4.96059 0.0 28.283    
cufflinks 1.80962 0.0 12.1857    
cufflinks 8.92783 0.0 44.4859   High
cufflinks 4.41446 0.0 23.8732    
cufflinks 6.89062 0.0 29.7782    
cufflinks 2.10898 0.0 12.4858    
cufflinks 0.125669 0.0 0.788797 Low Low
cufflinks 1.9841 0.0 14.0577    

0 Strain