Gene : Phvul.003G207700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10694:SF38 - LYSINE-SPECIFIC DEMETHYLASE REF6 Genomic Order:  2098
Name:  ? Phvul.003G207700 Secondary Identifier:  ? PAC:37148366
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G207700 0.5kb upstream 0.5kb upstream 10127 true Chr03: 43367276-43377402 Phaseolus vulgaris
Phvul.003G207700 0.5kb upstream 0.5kb upstream 500 false Chr03: 43367276-43367775 Phaseolus vulgaris
Phvul.003G207700 0.5kb downstream 0.5kb downstream 10127 true Chr03: 43367776-43377902 Phaseolus vulgaris
Phvul.003G207700 0.5kb downstream 0.5kb downstream 500 false Chr03: 43377403-43377902 Phaseolus vulgaris
Phvul.003G207700 1.0kb upstream 1.0kb upstream 10627 true Chr03: 43366776-43377402 Phaseolus vulgaris
Phvul.003G207700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 43366776-43367775 Phaseolus vulgaris
Phvul.003G207700 1.0kb downstream 1.0kb downstream 10627 true Chr03: 43367776-43378402 Phaseolus vulgaris
Phvul.003G207700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 43377403-43378402 Phaseolus vulgaris
Phvul.003G207700 2.0kb upstream 2.0kb upstream 11627 true Chr03: 43365776-43377402 Phaseolus vulgaris
Phvul.003G207700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 43365776-43367775 Phaseolus vulgaris
Phvul.003G207700 2.0kb downstream 2.0kb downstream 11627 true Chr03: 43367776-43379402 Phaseolus vulgaris
Phvul.003G207700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 43377403-43379402 Phaseolus vulgaris
Phvul.003G207700 5.0kb upstream 5.0kb upstream 14627 true Chr03: 43362776-43377402 Phaseolus vulgaris
Phvul.003G207700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 43362776-43367775 Phaseolus vulgaris
Phvul.003G207700 5.0kb downstream 5.0kb downstream 14627 true Chr03: 43367776-43382402 Phaseolus vulgaris
Phvul.003G207700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 43377403-43382402 Phaseolus vulgaris
Phvul.003G207700 10.0kb upstream 10.0kb upstream 19627 true Chr03: 43357776-43377402 Phaseolus vulgaris
Phvul.003G207700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 43357776-43367775 Phaseolus vulgaris
Phvul.003G207700 10.0kb downstream 10.0kb downstream 19627 true Chr03: 43367776-43387402 Phaseolus vulgaris
Phvul.003G207700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 43377403-43387402 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314341 5265 Fabidae View MSA
124060683 5270 Rosid View MSA
123752621 5271 Pentapetalae View MSA
122794300 5272 Eudicot View MSA
122042363 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121351254 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.13727 0.0 4.0883   Low
cufflinks 3.67695 0.0 10.7114    
cufflinks 6.84199 0.0 19.0547    
cufflinks 1.62589 0.0 5.4447   Low
cufflinks 4.75722 0.0 13.5497    
cufflinks 9.35051 0.0 26.2506    
cufflinks 7.04419 0.0 19.6653    
cufflinks 7.67158 0.0 21.3514    
cufflinks 5.86096 0.0 16.3116    
cufflinks 10.6095 0.0 29.8309   High
cufflinks 3.37517 0.0 10.0221    

0 Strain