Gene : Phvul.003G208500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11349:SF44 - NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC Genomic Order:  2106
Name:  ? Phvul.003G208500 Secondary Identifier:  ? PAC:37145682
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Sequence Feature Displayer

Ontology Annotation Displayer

18 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-162 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6545 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7176 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7184 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7196 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7197 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7200 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7205 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7208 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7210 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7211 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7221 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7224 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7226 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7227 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7228 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7229 Phaseolus vulgaris pathologic  
Pvulgaris PWY-841 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G208500 0.5kb upstream 0.5kb upstream 4291 true Chr03: 43423869-43428159 Phaseolus vulgaris
Phvul.003G208500 0.5kb upstream 0.5kb upstream 500 false Chr03: 43427660-43428159 Phaseolus vulgaris
Phvul.003G208500 0.5kb downstream 0.5kb downstream 4291 true Chr03: 43423369-43427659 Phaseolus vulgaris
Phvul.003G208500 0.5kb downstream 0.5kb downstream 500 false Chr03: 43423369-43423868 Phaseolus vulgaris
Phvul.003G208500 1.0kb upstream 1.0kb upstream 4791 true Chr03: 43423869-43428659 Phaseolus vulgaris
Phvul.003G208500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 43427660-43428659 Phaseolus vulgaris
Phvul.003G208500 1.0kb downstream 1.0kb downstream 4791 true Chr03: 43422869-43427659 Phaseolus vulgaris
Phvul.003G208500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 43422869-43423868 Phaseolus vulgaris
Phvul.003G208500 2.0kb upstream 2.0kb upstream 5791 true Chr03: 43423869-43429659 Phaseolus vulgaris
Phvul.003G208500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 43427660-43429659 Phaseolus vulgaris
Phvul.003G208500 2.0kb downstream 2.0kb downstream 5791 true Chr03: 43421869-43427659 Phaseolus vulgaris
Phvul.003G208500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 43421869-43423868 Phaseolus vulgaris
Phvul.003G208500 5.0kb upstream 5.0kb upstream 8791 true Chr03: 43423869-43432659 Phaseolus vulgaris
Phvul.003G208500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 43427660-43432659 Phaseolus vulgaris
Phvul.003G208500 5.0kb downstream 5.0kb downstream 8791 true Chr03: 43418869-43427659 Phaseolus vulgaris
Phvul.003G208500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 43418869-43423868 Phaseolus vulgaris
Phvul.003G208500 10.0kb upstream 10.0kb upstream 13791 true Chr03: 43423869-43437659 Phaseolus vulgaris
Phvul.003G208500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 43427660-43437659 Phaseolus vulgaris
Phvul.003G208500 10.0kb downstream 10.0kb downstream 13791 true Chr03: 43413869-43427659 Phaseolus vulgaris
Phvul.003G208500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 43413869-43423868 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300564 5265 Fabidae View MSA
124063920 5270 Rosid View MSA
123743535 5271 Pentapetalae View MSA
122788809 5272 Eudicot View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 68.8168 0.0 178.653 High  
cufflinks 66.6665 0.0 173.15 High  
cufflinks 222.045 0.0 634.67 High High
cufflinks 83.7933 0.0 219.254 High  
cufflinks 46.6162 0.0 120.539 High  
cufflinks 112.917 0.0 302.455 High High
cufflinks 19.355 0.0 51.8293   Low
cufflinks 33.142 0.0 86.1037 High  
cufflinks 26.3724 0.0 69.1981    
cufflinks 31.7412 0.0 82.7877    
cufflinks 40.8734 0.0 105.819 High  

0 Strain