Gene : Phvul.003G198200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12297 - HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED Genomic Order:  2004
Name:  ? Phvul.003G198200 Secondary Identifier:  ? PAC:37146924
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G198200 0.5kb upstream 0.5kb upstream 2224 true Chr03: 42277299-42279522 Phaseolus vulgaris
Phvul.003G198200 0.5kb upstream 0.5kb upstream 500 false Chr03: 42277299-42277798 Phaseolus vulgaris
Phvul.003G198200 0.5kb downstream 0.5kb downstream 2224 true Chr03: 42277799-42280022 Phaseolus vulgaris
Phvul.003G198200 0.5kb downstream 0.5kb downstream 500 false Chr03: 42279523-42280022 Phaseolus vulgaris
Phvul.003G198200 1.0kb upstream 1.0kb upstream 2724 true Chr03: 42276799-42279522 Phaseolus vulgaris
Phvul.003G198200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42276799-42277798 Phaseolus vulgaris
Phvul.003G198200 1.0kb downstream 1.0kb downstream 2724 true Chr03: 42277799-42280522 Phaseolus vulgaris
Phvul.003G198200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42279523-42280522 Phaseolus vulgaris
Phvul.003G198200 2.0kb upstream 2.0kb upstream 3724 true Chr03: 42275799-42279522 Phaseolus vulgaris
Phvul.003G198200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42275799-42277798 Phaseolus vulgaris
Phvul.003G198200 2.0kb downstream 2.0kb downstream 3724 true Chr03: 42277799-42281522 Phaseolus vulgaris
Phvul.003G198200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42279523-42281522 Phaseolus vulgaris
Phvul.003G198200 5.0kb upstream 5.0kb upstream 6724 true Chr03: 42272799-42279522 Phaseolus vulgaris
Phvul.003G198200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42272799-42277798 Phaseolus vulgaris
Phvul.003G198200 5.0kb downstream 5.0kb downstream 6724 true Chr03: 42277799-42284522 Phaseolus vulgaris
Phvul.003G198200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42279523-42284522 Phaseolus vulgaris
Phvul.003G198200 10.0kb upstream 10.0kb upstream 11724 true Chr03: 42267799-42279522 Phaseolus vulgaris
Phvul.003G198200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42267799-42277798 Phaseolus vulgaris
Phvul.003G198200 10.0kb downstream 10.0kb downstream 11724 true Chr03: 42277799-42289522 Phaseolus vulgaris
Phvul.003G198200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42279523-42289522 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306805 5265 Fabidae View MSA
124069964 5270 Rosid View MSA
123750302 5271 Pentapetalae View MSA
122790917 5272 Eudicot View MSA
122045148 5273 Angiosperm View MSA
121347874 5274 Embryophyte View MSA
123423754 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 65.8294 0.0 171.815 High High
cufflinks 30.3056 0.0 83.8874    
cufflinks 35.58 0.0 96.978    
cufflinks 89.1879 0.0 231.028 High High
cufflinks 52.1641 0.0 138.592 High  
cufflinks 28.7489 0.0 79.8972   Low
cufflinks 26.2119 0.0 73.653   Low
cufflinks 39.0937 0.0 105.662 High  
cufflinks 38.9022 0.0 105.832 High  
cufflinks 49.3499 0.0 131.243 High  
cufflinks 39.8236 0.0 108.024 High  

0 Strain