Gene : Phvul.003G202900 P. vulgaris v2.1
Defline:  (1 of 1) K03517 - quinolinate synthase (nadA) Genomic Order:  2050
Name:  ? Phvul.003G202900 Secondary Identifier:  ? PAC:37146060
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PYRIDNUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G202900 0.5kb upstream 0.5kb upstream 6569 true Chr03: 42830005-42836573 Phaseolus vulgaris
Phvul.003G202900 0.5kb upstream 0.5kb upstream 500 false Chr03: 42830005-42830504 Phaseolus vulgaris
Phvul.003G202900 0.5kb downstream 0.5kb downstream 6569 true Chr03: 42830505-42837073 Phaseolus vulgaris
Phvul.003G202900 0.5kb downstream 0.5kb downstream 500 false Chr03: 42836574-42837073 Phaseolus vulgaris
Phvul.003G202900 1.0kb upstream 1.0kb upstream 7069 true Chr03: 42829505-42836573 Phaseolus vulgaris
Phvul.003G202900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42829505-42830504 Phaseolus vulgaris
Phvul.003G202900 1.0kb downstream 1.0kb downstream 7069 true Chr03: 42830505-42837573 Phaseolus vulgaris
Phvul.003G202900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42836574-42837573 Phaseolus vulgaris
Phvul.003G202900 2.0kb upstream 2.0kb upstream 8069 true Chr03: 42828505-42836573 Phaseolus vulgaris
Phvul.003G202900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42828505-42830504 Phaseolus vulgaris
Phvul.003G202900 2.0kb downstream 2.0kb downstream 8069 true Chr03: 42830505-42838573 Phaseolus vulgaris
Phvul.003G202900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42836574-42838573 Phaseolus vulgaris
Phvul.003G202900 5.0kb upstream 5.0kb upstream 11069 true Chr03: 42825505-42836573 Phaseolus vulgaris
Phvul.003G202900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42825505-42830504 Phaseolus vulgaris
Phvul.003G202900 5.0kb downstream 5.0kb downstream 11069 true Chr03: 42830505-42841573 Phaseolus vulgaris
Phvul.003G202900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42836574-42841573 Phaseolus vulgaris
Phvul.003G202900 10.0kb upstream 10.0kb upstream 16069 true Chr03: 42820505-42836573 Phaseolus vulgaris
Phvul.003G202900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42820505-42830504 Phaseolus vulgaris
Phvul.003G202900 10.0kb downstream 10.0kb downstream 16069 true Chr03: 42830505-42846573 Phaseolus vulgaris
Phvul.003G202900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42836574-42846573 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305175 5265 Fabidae View MSA
124063584 5270 Rosid View MSA
123753415 5271 Pentapetalae View MSA
122792816 5272 Eudicot View MSA
122044938 5273 Angiosperm View MSA
121346502 5274 Embryophyte View MSA
123424432 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.13345 0.0 23.8119    
cufflinks 6.25776 0.0 16.6721    
cufflinks 16.7184 0.0 43.2545   High
cufflinks 6.34132 0.0 16.942    
cufflinks 11.8148 0.0 30.593   High
cufflinks 3.42914 0.0 9.6242    
cufflinks 4.16928 0.0 11.4665    
cufflinks 1.79177 0.0 5.37822   Low
cufflinks 3.93472 0.0 10.8957    
cufflinks 6.28125 0.0 16.7204    
cufflinks 9.35846 0.0 24.3697    

0 Strain