Gene : Phvul.003G203300 P. vulgaris v2.1
Defline:  (1 of 18) 1.1.1.330 - Very-long-chain 3-oxoacyl-CoA reductase / Very-long-chain beta-ketoacyl-CoA reductase Genomic Order:  2054
Name:  ? Phvul.003G203300 Secondary Identifier:  ? PAC:37148375
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5080 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6433 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6598 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7036 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7601 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7606 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7619 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G203300 0.5kb upstream 0.5kb upstream 3029 true Chr03: 42896111-42899139 Phaseolus vulgaris
Phvul.003G203300 0.5kb upstream 0.5kb upstream 500 false Chr03: 42898640-42899139 Phaseolus vulgaris
Phvul.003G203300 0.5kb downstream 0.5kb downstream 3029 true Chr03: 42895611-42898639 Phaseolus vulgaris
Phvul.003G203300 0.5kb downstream 0.5kb downstream 500 false Chr03: 42895611-42896110 Phaseolus vulgaris
Phvul.003G203300 1.0kb upstream 1.0kb upstream 3529 true Chr03: 42896111-42899639 Phaseolus vulgaris
Phvul.003G203300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42898640-42899639 Phaseolus vulgaris
Phvul.003G203300 1.0kb downstream 1.0kb downstream 3529 true Chr03: 42895111-42898639 Phaseolus vulgaris
Phvul.003G203300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42895111-42896110 Phaseolus vulgaris
Phvul.003G203300 2.0kb upstream 2.0kb upstream 4529 true Chr03: 42896111-42900639 Phaseolus vulgaris
Phvul.003G203300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42898640-42900639 Phaseolus vulgaris
Phvul.003G203300 2.0kb downstream 2.0kb downstream 4529 true Chr03: 42894111-42898639 Phaseolus vulgaris
Phvul.003G203300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42894111-42896110 Phaseolus vulgaris
Phvul.003G203300 5.0kb upstream 5.0kb upstream 7529 true Chr03: 42896111-42903639 Phaseolus vulgaris
Phvul.003G203300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42898640-42903639 Phaseolus vulgaris
Phvul.003G203300 5.0kb downstream 5.0kb downstream 7529 true Chr03: 42891111-42898639 Phaseolus vulgaris
Phvul.003G203300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42891111-42896110 Phaseolus vulgaris
Phvul.003G203300 10.0kb upstream 10.0kb upstream 12529 true Chr03: 42896111-42908639 Phaseolus vulgaris
Phvul.003G203300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42898640-42908639 Phaseolus vulgaris
Phvul.003G203300 10.0kb downstream 10.0kb downstream 12529 true Chr03: 42886111-42898639 Phaseolus vulgaris
Phvul.003G203300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42886111-42896110 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310361 5265 Fabidae View MSA
124064141 5270 Rosid View MSA
123748222 5271 Pentapetalae View MSA
122791210 5272 Eudicot View MSA
122047587 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121310767 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.709472 0.0 2.59195    
cufflinks 0.356213 0.0 1.38169 Low  
cufflinks 0.644423 0.0 2.37665    
cufflinks 0.200214 0.0 0.81705 Low Low
cufflinks 0.564125 0.0 2.12874 Low  
cufflinks 2.84746 0.0 8.98306   High
cufflinks 0.930185 0.0 3.32531    
cufflinks 0.256538 0.0 1.01566 Low  
cufflinks 0.92052 0.0 3.29688    
cufflinks 0.22944 0.0 0.922558 Low Low
cufflinks 3.31159 0.0 10.383   High

0 Strain