Gene : Phvul.003G186500 P. vulgaris v2.1
Defline:  (1 of 3) K18211 - synaptosomal-associated protein 25 (SNAP25) Genomic Order:  1885
Name:  ? Phvul.003G186500 Secondary Identifier:  ? PAC:37147569
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G186500 0.5kb upstream 0.5kb upstream 3367 true Chr03: 40963217-40966583 Phaseolus vulgaris
Phvul.003G186500 0.5kb upstream 0.5kb upstream 500 false Chr03: 40963217-40963716 Phaseolus vulgaris
Phvul.003G186500 0.5kb downstream 0.5kb downstream 3367 true Chr03: 40963717-40967083 Phaseolus vulgaris
Phvul.003G186500 0.5kb downstream 0.5kb downstream 500 false Chr03: 40966584-40967083 Phaseolus vulgaris
Phvul.003G186500 1.0kb upstream 1.0kb upstream 3867 true Chr03: 40962717-40966583 Phaseolus vulgaris
Phvul.003G186500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40962717-40963716 Phaseolus vulgaris
Phvul.003G186500 1.0kb downstream 1.0kb downstream 3867 true Chr03: 40963717-40967583 Phaseolus vulgaris
Phvul.003G186500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40966584-40967583 Phaseolus vulgaris
Phvul.003G186500 2.0kb upstream 2.0kb upstream 4867 true Chr03: 40961717-40966583 Phaseolus vulgaris
Phvul.003G186500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40961717-40963716 Phaseolus vulgaris
Phvul.003G186500 2.0kb downstream 2.0kb downstream 4867 true Chr03: 40963717-40968583 Phaseolus vulgaris
Phvul.003G186500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40966584-40968583 Phaseolus vulgaris
Phvul.003G186500 5.0kb upstream 5.0kb upstream 7867 true Chr03: 40958717-40966583 Phaseolus vulgaris
Phvul.003G186500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40958717-40963716 Phaseolus vulgaris
Phvul.003G186500 5.0kb downstream 5.0kb downstream 7867 true Chr03: 40963717-40971583 Phaseolus vulgaris
Phvul.003G186500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40966584-40971583 Phaseolus vulgaris
Phvul.003G186500 10.0kb upstream 10.0kb upstream 12867 true Chr03: 40953717-40966583 Phaseolus vulgaris
Phvul.003G186500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40953717-40963716 Phaseolus vulgaris
Phvul.003G186500 10.0kb downstream 10.0kb downstream 12867 true Chr03: 40963717-40976583 Phaseolus vulgaris
Phvul.003G186500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40966584-40976583 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300363 5265 Fabidae View MSA
124069233 5270 Rosid View MSA
123745951 5271 Pentapetalae View MSA
122796965 5272 Eudicot View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.7288 0.0 51.8816   High
cufflinks 10.2478 0.0 33.3337    
cufflinks 5.08246 0.0 18.0904   Low
cufflinks 11.2668 0.0 39.6651    
cufflinks 6.93645 0.0 23.4708    
cufflinks 6.2867 0.0 21.4083   Low
cufflinks 11.7934 0.0 36.4831    
cufflinks 21.1829 0.0 60.5856   High
cufflinks 13.7584 0.0 42.0136    
cufflinks 8.10665 0.0 27.3959    
cufflinks 9.23893 0.0 29.6373    

0 Strain