Gene : Phvul.003G189100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11945:SF156 - MADS-BOX PROTEIN-RELATED Genomic Order:  1913
Name:  ? Phvul.003G189100 Secondary Identifier:  ? PAC:37146037
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G189100 0.5kb upstream 0.5kb upstream 5471 true Chr03: 41275803-41281273 Phaseolus vulgaris
Phvul.003G189100 0.5kb upstream 0.5kb upstream 500 false Chr03: 41280774-41281273 Phaseolus vulgaris
Phvul.003G189100 0.5kb downstream 0.5kb downstream 5471 true Chr03: 41275303-41280773 Phaseolus vulgaris
Phvul.003G189100 0.5kb downstream 0.5kb downstream 500 false Chr03: 41275303-41275802 Phaseolus vulgaris
Phvul.003G189100 1.0kb upstream 1.0kb upstream 5971 true Chr03: 41275803-41281773 Phaseolus vulgaris
Phvul.003G189100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41280774-41281773 Phaseolus vulgaris
Phvul.003G189100 1.0kb downstream 1.0kb downstream 5971 true Chr03: 41274803-41280773 Phaseolus vulgaris
Phvul.003G189100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41274803-41275802 Phaseolus vulgaris
Phvul.003G189100 2.0kb upstream 2.0kb upstream 6971 true Chr03: 41275803-41282773 Phaseolus vulgaris
Phvul.003G189100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41280774-41282773 Phaseolus vulgaris
Phvul.003G189100 2.0kb downstream 2.0kb downstream 6971 true Chr03: 41273803-41280773 Phaseolus vulgaris
Phvul.003G189100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41273803-41275802 Phaseolus vulgaris
Phvul.003G189100 5.0kb upstream 5.0kb upstream 9971 true Chr03: 41275803-41285773 Phaseolus vulgaris
Phvul.003G189100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41280774-41285773 Phaseolus vulgaris
Phvul.003G189100 5.0kb downstream 5.0kb downstream 9971 true Chr03: 41270803-41280773 Phaseolus vulgaris
Phvul.003G189100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41270803-41275802 Phaseolus vulgaris
Phvul.003G189100 10.0kb upstream 10.0kb upstream 14971 true Chr03: 41275803-41290773 Phaseolus vulgaris
Phvul.003G189100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41280774-41290773 Phaseolus vulgaris
Phvul.003G189100 10.0kb downstream 10.0kb downstream 14971 true Chr03: 41265803-41280773 Phaseolus vulgaris
Phvul.003G189100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41265803-41275802 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312071 5265 Fabidae View MSA
124062317 5270 Rosid View MSA
123742642 5271 Pentapetalae View MSA
122791202 5272 Eudicot View MSA
122050633 5273 Angiosperm View MSA
121350455 5274 Embryophyte View MSA
123427239 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.0534 0.0 3.69859   High
cufflinks 1.05447 0.0 3.70368   High
cufflinks 0.28193 0.0 1.10565 Low  
cufflinks 0.663677 0.0 2.45103    
cufflinks 0.531109 0.0 2.00415 Low  
cufflinks 0.704593 0.0 2.56972    
cufflinks 0.107279 0.0 0.456733 Low Low
cufflinks 0.868531 0.0 3.08803    
cufflinks 0.0880324 0.0 0.38232 Low Low
cufflinks 0.58163 0.0 2.16113    
cufflinks 0.231245 0.0 0.928966 Low  

0 Strain