Gene : Phvul.003G190200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11062//PTHR11062:SF99 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // SUBFAMILY NOT NAMED Genomic Order:  1924
Name:  ? Phvul.003G190200 Secondary Identifier:  ? PAC:37144671
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5980 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G190200 0.5kb upstream 0.5kb upstream 2574 true Chr03: 41354085-41356658 Phaseolus vulgaris
Phvul.003G190200 0.5kb upstream 0.5kb upstream 500 false Chr03: 41356159-41356658 Phaseolus vulgaris
Phvul.003G190200 0.5kb downstream 0.5kb downstream 2574 true Chr03: 41353585-41356158 Phaseolus vulgaris
Phvul.003G190200 0.5kb downstream 0.5kb downstream 500 false Chr03: 41353585-41354084 Phaseolus vulgaris
Phvul.003G190200 1.0kb upstream 1.0kb upstream 3074 true Chr03: 41354085-41357158 Phaseolus vulgaris
Phvul.003G190200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41356159-41357158 Phaseolus vulgaris
Phvul.003G190200 1.0kb downstream 1.0kb downstream 3074 true Chr03: 41353085-41356158 Phaseolus vulgaris
Phvul.003G190200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41353085-41354084 Phaseolus vulgaris
Phvul.003G190200 2.0kb upstream 2.0kb upstream 4074 true Chr03: 41354085-41358158 Phaseolus vulgaris
Phvul.003G190200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41356159-41358158 Phaseolus vulgaris
Phvul.003G190200 2.0kb downstream 2.0kb downstream 4074 true Chr03: 41352085-41356158 Phaseolus vulgaris
Phvul.003G190200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41352085-41354084 Phaseolus vulgaris
Phvul.003G190200 5.0kb upstream 5.0kb upstream 7074 true Chr03: 41354085-41361158 Phaseolus vulgaris
Phvul.003G190200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41356159-41361158 Phaseolus vulgaris
Phvul.003G190200 5.0kb downstream 5.0kb downstream 7074 true Chr03: 41349085-41356158 Phaseolus vulgaris
Phvul.003G190200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41349085-41354084 Phaseolus vulgaris
Phvul.003G190200 10.0kb upstream 10.0kb upstream 12074 true Chr03: 41354085-41366158 Phaseolus vulgaris
Phvul.003G190200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41356159-41366158 Phaseolus vulgaris
Phvul.003G190200 10.0kb downstream 10.0kb downstream 12074 true Chr03: 41344085-41356158 Phaseolus vulgaris
Phvul.003G190200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41344085-41354084 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310463 5265 Fabidae View MSA
124068491 5270 Rosid View MSA
123736949 5271 Pentapetalae View MSA
122787546 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.104879 0.0 0.44465 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0431825 0.0 0.200589 Low Low
cufflinks 0.202612 0.0 0.818986 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.67538 0.0 2.45952    
cufflinks 1.03365 0.0 3.59628   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.142207 0.0 0.590344 Low  

0 Strain