Gene : Phvul.003G191100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12300:SF52 - HVA22-LIKE PROTEIN A-RELATED Genomic Order:  1933
Name:  ? Phvul.003G191100 Secondary Identifier:  ? PAC:37147201
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G191100 0.5kb upstream 0.5kb upstream 2420 true Chr03: 41491877-41494296 Phaseolus vulgaris
Phvul.003G191100 0.5kb upstream 0.5kb upstream 500 false Chr03: 41491877-41492376 Phaseolus vulgaris
Phvul.003G191100 0.5kb downstream 0.5kb downstream 2420 true Chr03: 41492377-41494796 Phaseolus vulgaris
Phvul.003G191100 0.5kb downstream 0.5kb downstream 500 false Chr03: 41494297-41494796 Phaseolus vulgaris
Phvul.003G191100 1.0kb upstream 1.0kb upstream 2920 true Chr03: 41491377-41494296 Phaseolus vulgaris
Phvul.003G191100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41491377-41492376 Phaseolus vulgaris
Phvul.003G191100 1.0kb downstream 1.0kb downstream 2920 true Chr03: 41492377-41495296 Phaseolus vulgaris
Phvul.003G191100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41494297-41495296 Phaseolus vulgaris
Phvul.003G191100 2.0kb upstream 2.0kb upstream 3920 true Chr03: 41490377-41494296 Phaseolus vulgaris
Phvul.003G191100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41490377-41492376 Phaseolus vulgaris
Phvul.003G191100 2.0kb downstream 2.0kb downstream 3920 true Chr03: 41492377-41496296 Phaseolus vulgaris
Phvul.003G191100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41494297-41496296 Phaseolus vulgaris
Phvul.003G191100 5.0kb upstream 5.0kb upstream 6920 true Chr03: 41487377-41494296 Phaseolus vulgaris
Phvul.003G191100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41487377-41492376 Phaseolus vulgaris
Phvul.003G191100 5.0kb downstream 5.0kb downstream 6920 true Chr03: 41492377-41499296 Phaseolus vulgaris
Phvul.003G191100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41494297-41499296 Phaseolus vulgaris
Phvul.003G191100 10.0kb upstream 10.0kb upstream 11920 true Chr03: 41482377-41494296 Phaseolus vulgaris
Phvul.003G191100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41482377-41492376 Phaseolus vulgaris
Phvul.003G191100 10.0kb downstream 10.0kb downstream 11920 true Chr03: 41492377-41504296 Phaseolus vulgaris
Phvul.003G191100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41494297-41504296 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304250 5265 Fabidae View MSA
124065574 5270 Rosid View MSA
123753411 5271 Pentapetalae View MSA
122797924 5272 Eudicot View MSA
122050358 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.57045 0.0 25.4248   Low
cufflinks 17.2923 0.0 47.9387    
cufflinks 19.6879 0.0 53.8397    
cufflinks 22.7251 0.0 61.6624   High
cufflinks 12.5394 0.0 36.0534    
cufflinks 17.8283 0.0 49.3088    
cufflinks 9.06461 0.0 26.9468   Low
cufflinks 17.4614 0.0 48.2899    
cufflinks 9.97917 0.0 29.4492   Low
cufflinks 14.4762 0.0 40.7679    
cufflinks 16.5034 0.0 46.2531    

0 Strain