Gene : Phvul.003G194200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22975 - UBIQUITIN SPECIFIC PROTEINASE Genomic Order:  1964
Name:  ? Phvul.003G194200 Secondary Identifier:  ? PAC:37148084
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G194200 0.5kb upstream 0.5kb upstream 9602 true Chr03: 41817570-41827171 Phaseolus vulgaris
Phvul.003G194200 0.5kb upstream 0.5kb upstream 500 false Chr03: 41817570-41818069 Phaseolus vulgaris
Phvul.003G194200 0.5kb downstream 0.5kb downstream 9602 true Chr03: 41818070-41827671 Phaseolus vulgaris
Phvul.003G194200 0.5kb downstream 0.5kb downstream 500 false Chr03: 41827172-41827671 Phaseolus vulgaris
Phvul.003G194200 1.0kb upstream 1.0kb upstream 10102 true Chr03: 41817070-41827171 Phaseolus vulgaris
Phvul.003G194200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41817070-41818069 Phaseolus vulgaris
Phvul.003G194200 1.0kb downstream 1.0kb downstream 10102 true Chr03: 41818070-41828171 Phaseolus vulgaris
Phvul.003G194200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41827172-41828171 Phaseolus vulgaris
Phvul.003G194200 2.0kb upstream 2.0kb upstream 11102 true Chr03: 41816070-41827171 Phaseolus vulgaris
Phvul.003G194200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41816070-41818069 Phaseolus vulgaris
Phvul.003G194200 2.0kb downstream 2.0kb downstream 11102 true Chr03: 41818070-41829171 Phaseolus vulgaris
Phvul.003G194200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41827172-41829171 Phaseolus vulgaris
Phvul.003G194200 5.0kb upstream 5.0kb upstream 14102 true Chr03: 41813070-41827171 Phaseolus vulgaris
Phvul.003G194200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41813070-41818069 Phaseolus vulgaris
Phvul.003G194200 5.0kb downstream 5.0kb downstream 14102 true Chr03: 41818070-41832171 Phaseolus vulgaris
Phvul.003G194200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41827172-41832171 Phaseolus vulgaris
Phvul.003G194200 10.0kb upstream 10.0kb upstream 19102 true Chr03: 41808070-41827171 Phaseolus vulgaris
Phvul.003G194200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41808070-41818069 Phaseolus vulgaris
Phvul.003G194200 10.0kb downstream 10.0kb downstream 19102 true Chr03: 41818070-41837171 Phaseolus vulgaris
Phvul.003G194200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41827172-41837171 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304724 5265 Fabidae View MSA
124072872 5270 Rosid View MSA
123749894 5271 Pentapetalae View MSA
122797305 5272 Eudicot View MSA
122047573 5273 Angiosperm View MSA
121346745 5274 Embryophyte View MSA
123380438 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.26832 0.0 8.60431   Low
cufflinks 9.68604 0.0 25.2742    
cufflinks 25.3199 0.0 71.6322   High
cufflinks 3.75477 0.0 9.84703   Low
cufflinks 13.5228 0.0 35.8318    
cufflinks 16.0513 0.0 43.346    
cufflinks 16.6814 0.0 45.2571    
cufflinks 16.0753 0.0 43.5347    
cufflinks 15.5948 0.0 42.0008    
cufflinks 26.2783 0.0 74.4816   High
cufflinks 8.91335 0.0 23.1578    

0 Strain