Gene : Phvul.003G181900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Genomic Order:  1843
Name:  ? Phvul.003G181900 Secondary Identifier:  ? PAC:37148324
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G181900 0.5kb upstream 0.5kb upstream 7380 true Chr03: 40467519-40474898 Phaseolus vulgaris
Phvul.003G181900 0.5kb upstream 0.5kb upstream 500 false Chr03: 40467519-40468018 Phaseolus vulgaris
Phvul.003G181900 0.5kb downstream 0.5kb downstream 7380 true Chr03: 40468019-40475398 Phaseolus vulgaris
Phvul.003G181900 0.5kb downstream 0.5kb downstream 500 false Chr03: 40474899-40475398 Phaseolus vulgaris
Phvul.003G181900 1.0kb upstream 1.0kb upstream 7880 true Chr03: 40467019-40474898 Phaseolus vulgaris
Phvul.003G181900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40467019-40468018 Phaseolus vulgaris
Phvul.003G181900 1.0kb downstream 1.0kb downstream 7880 true Chr03: 40468019-40475898 Phaseolus vulgaris
Phvul.003G181900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40474899-40475898 Phaseolus vulgaris
Phvul.003G181900 2.0kb upstream 2.0kb upstream 8880 true Chr03: 40466019-40474898 Phaseolus vulgaris
Phvul.003G181900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40466019-40468018 Phaseolus vulgaris
Phvul.003G181900 2.0kb downstream 2.0kb downstream 8880 true Chr03: 40468019-40476898 Phaseolus vulgaris
Phvul.003G181900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40474899-40476898 Phaseolus vulgaris
Phvul.003G181900 5.0kb upstream 5.0kb upstream 11880 true Chr03: 40463019-40474898 Phaseolus vulgaris
Phvul.003G181900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40463019-40468018 Phaseolus vulgaris
Phvul.003G181900 5.0kb downstream 5.0kb downstream 11880 true Chr03: 40468019-40479898 Phaseolus vulgaris
Phvul.003G181900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40474899-40479898 Phaseolus vulgaris
Phvul.003G181900 10.0kb upstream 10.0kb upstream 16880 true Chr03: 40458019-40474898 Phaseolus vulgaris
Phvul.003G181900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40458019-40468018 Phaseolus vulgaris
Phvul.003G181900 10.0kb downstream 10.0kb downstream 16880 true Chr03: 40468019-40484898 Phaseolus vulgaris
Phvul.003G181900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40474899-40484898 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302462 5265 Fabidae View MSA
124066777 5270 Rosid View MSA
123738645 5271 Pentapetalae View MSA
122790983 5272 Eudicot View MSA
122046881 5273 Angiosperm View MSA
121348142 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.63099 0.0 25.9881   Low
cufflinks 12.5345 0.0 42.2964    
cufflinks 10.5437 0.0 34.5108   Low
cufflinks 22.743 0.0 72.5562   High
cufflinks 11.7102 0.0 34.3279    
cufflinks 14.197 0.0 47.8839    
cufflinks 20.6255 0.0 65.7608    
cufflinks 23.3416 0.0 74.8502   High
cufflinks 19.2167 0.0 61.1219    
cufflinks 15.192 0.0 51.0505    
cufflinks 14.8595 0.0 47.4465    

0 Strain