Gene : Phvul.003G182900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31251:SF22 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 15-RELATED Genomic Order:  1853
Name:  ? Phvul.003G182900 Secondary Identifier:  ? PAC:37145136
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G182900 0.5kb upstream 0.5kb upstream 5642 true Chr03: 40611576-40617217 Phaseolus vulgaris
Phvul.003G182900 0.5kb upstream 0.5kb upstream 500 false Chr03: 40611576-40612075 Phaseolus vulgaris
Phvul.003G182900 0.5kb downstream 0.5kb downstream 5642 true Chr03: 40612076-40617717 Phaseolus vulgaris
Phvul.003G182900 0.5kb downstream 0.5kb downstream 500 false Chr03: 40617218-40617717 Phaseolus vulgaris
Phvul.003G182900 1.0kb upstream 1.0kb upstream 6142 true Chr03: 40611076-40617217 Phaseolus vulgaris
Phvul.003G182900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40611076-40612075 Phaseolus vulgaris
Phvul.003G182900 1.0kb downstream 1.0kb downstream 6142 true Chr03: 40612076-40618217 Phaseolus vulgaris
Phvul.003G182900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40617218-40618217 Phaseolus vulgaris
Phvul.003G182900 2.0kb upstream 2.0kb upstream 7142 true Chr03: 40610076-40617217 Phaseolus vulgaris
Phvul.003G182900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40610076-40612075 Phaseolus vulgaris
Phvul.003G182900 2.0kb downstream 2.0kb downstream 7142 true Chr03: 40612076-40619217 Phaseolus vulgaris
Phvul.003G182900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40617218-40619217 Phaseolus vulgaris
Phvul.003G182900 5.0kb upstream 5.0kb upstream 10142 true Chr03: 40607076-40617217 Phaseolus vulgaris
Phvul.003G182900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40607076-40612075 Phaseolus vulgaris
Phvul.003G182900 5.0kb downstream 5.0kb downstream 10142 true Chr03: 40612076-40622217 Phaseolus vulgaris
Phvul.003G182900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40617218-40622217 Phaseolus vulgaris
Phvul.003G182900 10.0kb upstream 10.0kb upstream 15142 true Chr03: 40602076-40617217 Phaseolus vulgaris
Phvul.003G182900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40602076-40612075 Phaseolus vulgaris
Phvul.003G182900 10.0kb downstream 10.0kb downstream 15142 true Chr03: 40612076-40627217 Phaseolus vulgaris
Phvul.003G182900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40617218-40627217 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303700 5265 Fabidae View MSA
124069639 5270 Rosid View MSA
123751370 5271 Pentapetalae View MSA
122794305 5272 Eudicot View MSA
122050333 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121351727 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.58778 0.0 12.8143    
cufflinks 10.1828 0.0 26.735   High
cufflinks 2.01066 0.0 6.12052   Low
cufflinks 5.87955 0.0 16.1006    
cufflinks 3.12699 0.0 9.10193    
cufflinks 4.06541 0.0 11.4908    
cufflinks 2.82748 0.0 8.28646    
cufflinks 1.95404 0.0 5.9663   Low
cufflinks 2.62485 0.0 7.7725    
cufflinks 3.44676 0.0 9.90064    
cufflinks 6.32647 0.0 17.2337   High

0 Strain