Gene : Phvul.003G184200 P. vulgaris v2.1
Defline:  (1 of 4) PTHR31413:SF4 - NINJA-FAMILY PROTEIN AFP1-RELATED Genomic Order:  1866
Name:  ? Phvul.003G184200 Secondary Identifier:  ? PAC:37148176
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G184200 0.5kb upstream 0.5kb upstream 3508 true Chr03: 40748443-40751950 Phaseolus vulgaris
Phvul.003G184200 0.5kb upstream 0.5kb upstream 500 false Chr03: 40748443-40748942 Phaseolus vulgaris
Phvul.003G184200 0.5kb downstream 0.5kb downstream 3508 true Chr03: 40748943-40752450 Phaseolus vulgaris
Phvul.003G184200 0.5kb downstream 0.5kb downstream 500 false Chr03: 40751951-40752450 Phaseolus vulgaris
Phvul.003G184200 1.0kb upstream 1.0kb upstream 4008 true Chr03: 40747943-40751950 Phaseolus vulgaris
Phvul.003G184200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40747943-40748942 Phaseolus vulgaris
Phvul.003G184200 1.0kb downstream 1.0kb downstream 4008 true Chr03: 40748943-40752950 Phaseolus vulgaris
Phvul.003G184200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40751951-40752950 Phaseolus vulgaris
Phvul.003G184200 2.0kb upstream 2.0kb upstream 5008 true Chr03: 40746943-40751950 Phaseolus vulgaris
Phvul.003G184200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40746943-40748942 Phaseolus vulgaris
Phvul.003G184200 2.0kb downstream 2.0kb downstream 5008 true Chr03: 40748943-40753950 Phaseolus vulgaris
Phvul.003G184200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40751951-40753950 Phaseolus vulgaris
Phvul.003G184200 5.0kb upstream 5.0kb upstream 8008 true Chr03: 40743943-40751950 Phaseolus vulgaris
Phvul.003G184200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40743943-40748942 Phaseolus vulgaris
Phvul.003G184200 5.0kb downstream 5.0kb downstream 8008 true Chr03: 40748943-40756950 Phaseolus vulgaris
Phvul.003G184200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40751951-40756950 Phaseolus vulgaris
Phvul.003G184200 10.0kb upstream 10.0kb upstream 13008 true Chr03: 40738943-40751950 Phaseolus vulgaris
Phvul.003G184200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40738943-40748942 Phaseolus vulgaris
Phvul.003G184200 10.0kb downstream 10.0kb downstream 13008 true Chr03: 40748943-40761950 Phaseolus vulgaris
Phvul.003G184200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40751951-40761950 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315194 5265 Fabidae View MSA
124071046 5270 Rosid View MSA
123753389 5271 Pentapetalae View MSA
122792096 5272 Eudicot View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.51052 0.0 11.4745    
cufflinks 0.804165 0.0 3.53591    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 9.80148 0.0 34.4627   High
cufflinks 0.49346 0.0 2.42494 Low  
cufflinks 2.74105 0.0 12.537    
cufflinks 2.22652 0.0 10.6217    
cufflinks 7.37351 0.0 26.3848    
cufflinks 0.0364027 0.0 0.191205 Low Low
cufflinks 0.0491295 0.0 0.253843 Low Low
cufflinks 4.3902 0.0 17.8437    

0 Strain