Gene : Phvul.003G240100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24093:SF272 - CADMIUM/ZINC-TRANSPORTING ATPASE HMA1, CHLOROPLASTIC-RELATED Genomic Order:  2434
Name:  ? Phvul.003G240100 Secondary Identifier:  ? PAC:37145343
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G240100 0.5kb upstream 0.5kb upstream 16931 true Chr03: 47415281-47432211 Phaseolus vulgaris
Phvul.003G240100 0.5kb upstream 0.5kb upstream 500 false Chr03: 47415281-47415780 Phaseolus vulgaris
Phvul.003G240100 0.5kb downstream 0.5kb downstream 16931 true Chr03: 47415781-47432711 Phaseolus vulgaris
Phvul.003G240100 0.5kb downstream 0.5kb downstream 500 false Chr03: 47432212-47432711 Phaseolus vulgaris
Phvul.003G240100 1.0kb upstream 1.0kb upstream 17431 true Chr03: 47414781-47432211 Phaseolus vulgaris
Phvul.003G240100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47414781-47415780 Phaseolus vulgaris
Phvul.003G240100 1.0kb downstream 1.0kb downstream 17431 true Chr03: 47415781-47433211 Phaseolus vulgaris
Phvul.003G240100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47432212-47433211 Phaseolus vulgaris
Phvul.003G240100 2.0kb upstream 2.0kb upstream 18431 true Chr03: 47413781-47432211 Phaseolus vulgaris
Phvul.003G240100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47413781-47415780 Phaseolus vulgaris
Phvul.003G240100 2.0kb downstream 2.0kb downstream 18431 true Chr03: 47415781-47434211 Phaseolus vulgaris
Phvul.003G240100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47432212-47434211 Phaseolus vulgaris
Phvul.003G240100 5.0kb upstream 5.0kb upstream 21431 true Chr03: 47410781-47432211 Phaseolus vulgaris
Phvul.003G240100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47410781-47415780 Phaseolus vulgaris
Phvul.003G240100 5.0kb downstream 5.0kb downstream 21431 true Chr03: 47415781-47437211 Phaseolus vulgaris
Phvul.003G240100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47432212-47437211 Phaseolus vulgaris
Phvul.003G240100 10.0kb upstream 10.0kb upstream 26431 true Chr03: 47405781-47432211 Phaseolus vulgaris
Phvul.003G240100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47405781-47415780 Phaseolus vulgaris
Phvul.003G240100 10.0kb downstream 10.0kb downstream 26431 true Chr03: 47415781-47442211 Phaseolus vulgaris
Phvul.003G240100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47432212-47442211 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300433 5265 Fabidae View MSA
124064324 5270 Rosid View MSA
123739287 5271 Pentapetalae View MSA
122793193 5272 Eudicot View MSA
122049253 5273 Angiosperm View MSA
121346683 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.8597 0.0 33.3189    
cufflinks 14.3605 0.0 37.1431    
cufflinks 33.7444 0.0 89.5784   High
cufflinks 11.1217 0.0 28.9763    
cufflinks 13.0226 0.0 33.7626    
cufflinks 20.6189 0.0 53.4447    
cufflinks 10.8448 0.0 28.2243    
cufflinks 12.1635 0.0 31.5215    
cufflinks 10.6889 0.0 27.8655    
cufflinks 29.6835 0.0 78.0105   High
cufflinks 12.574 0.0 32.6248    

0 Strain