Gene : Phvul.003G293900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22792:SF62 - LA-RELATED PROTEIN 6C Genomic Order:  2987
Name:  ? Phvul.003G293900 Secondary Identifier:  ? PAC:37145604
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G293900 0.5kb upstream 0.5kb upstream 3407 true Chr03: 53097747-53101153 Phaseolus vulgaris
Phvul.003G293900 0.5kb upstream 0.5kb upstream 500 false Chr03: 53097747-53098246 Phaseolus vulgaris
Phvul.003G293900 0.5kb downstream 0.5kb downstream 3407 true Chr03: 53098247-53101653 Phaseolus vulgaris
Phvul.003G293900 0.5kb downstream 0.5kb downstream 500 false Chr03: 53101154-53101653 Phaseolus vulgaris
Phvul.003G293900 1.0kb upstream 1.0kb upstream 3907 true Chr03: 53097247-53101153 Phaseolus vulgaris
Phvul.003G293900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 53097247-53098246 Phaseolus vulgaris
Phvul.003G293900 1.0kb downstream 1.0kb downstream 3907 true Chr03: 53098247-53102153 Phaseolus vulgaris
Phvul.003G293900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 53101154-53102153 Phaseolus vulgaris
Phvul.003G293900 2.0kb upstream 2.0kb upstream 4907 true Chr03: 53096247-53101153 Phaseolus vulgaris
Phvul.003G293900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 53096247-53098246 Phaseolus vulgaris
Phvul.003G293900 2.0kb downstream 2.0kb downstream 4907 true Chr03: 53098247-53103153 Phaseolus vulgaris
Phvul.003G293900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 53101154-53103153 Phaseolus vulgaris
Phvul.003G293900 5.0kb upstream 5.0kb upstream 7907 true Chr03: 53093247-53101153 Phaseolus vulgaris
Phvul.003G293900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 53093247-53098246 Phaseolus vulgaris
Phvul.003G293900 5.0kb downstream 5.0kb downstream 7907 true Chr03: 53098247-53106153 Phaseolus vulgaris
Phvul.003G293900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 53101154-53106153 Phaseolus vulgaris
Phvul.003G293900 10.0kb upstream 10.0kb upstream 12907 true Chr03: 53088247-53101153 Phaseolus vulgaris
Phvul.003G293900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 53088247-53098246 Phaseolus vulgaris
Phvul.003G293900 10.0kb downstream 10.0kb downstream 12907 true Chr03: 53098247-53111153 Phaseolus vulgaris
Phvul.003G293900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 53101154-53111153 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300411 5265 Fabidae View MSA
124067915 5270 Rosid View MSA
123749419 5271 Pentapetalae View MSA
122785801 5272 Eudicot View MSA
122051197 5273 Angiosperm View MSA
121349510 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.34948 0.0 1.34141 Low Low
cufflinks 0.487903 0.0 1.82252 Low  
cufflinks 0.885889 0.0 3.12804    
cufflinks 1.88847 0.0 6.18186   High
cufflinks 0.805259 0.0 2.89476    
cufflinks 0.416067 0.0 1.57337 Low  
cufflinks 1.4557 0.0 4.86268    
cufflinks 1.99587 0.0 6.41469   High
cufflinks 1.82214 0.0 5.94095   High
cufflinks 0.196446 0.0 0.789893 Low Low
cufflinks 0.853374 0.0 3.04353    

0 Strain