Gene : Phvul.003G238100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22904//PTHR22904:SF381 - TPR REPEAT CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2415
Name:  ? Phvul.003G238100 Secondary Identifier:  ? PAC:37147691
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G238100 0.5kb upstream 0.5kb upstream 2716 true Chr03: 47212957-47215672 Phaseolus vulgaris
Phvul.003G238100 0.5kb upstream 0.5kb upstream 500 false Chr03: 47215173-47215672 Phaseolus vulgaris
Phvul.003G238100 0.5kb downstream 0.5kb downstream 2716 true Chr03: 47212457-47215172 Phaseolus vulgaris
Phvul.003G238100 0.5kb downstream 0.5kb downstream 500 false Chr03: 47212457-47212956 Phaseolus vulgaris
Phvul.003G238100 1.0kb upstream 1.0kb upstream 3216 true Chr03: 47212957-47216172 Phaseolus vulgaris
Phvul.003G238100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47215173-47216172 Phaseolus vulgaris
Phvul.003G238100 1.0kb downstream 1.0kb downstream 3216 true Chr03: 47211957-47215172 Phaseolus vulgaris
Phvul.003G238100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47211957-47212956 Phaseolus vulgaris
Phvul.003G238100 2.0kb upstream 2.0kb upstream 4216 true Chr03: 47212957-47217172 Phaseolus vulgaris
Phvul.003G238100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47215173-47217172 Phaseolus vulgaris
Phvul.003G238100 2.0kb downstream 2.0kb downstream 4216 true Chr03: 47210957-47215172 Phaseolus vulgaris
Phvul.003G238100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47210957-47212956 Phaseolus vulgaris
Phvul.003G238100 5.0kb upstream 5.0kb upstream 7216 true Chr03: 47212957-47220172 Phaseolus vulgaris
Phvul.003G238100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47215173-47220172 Phaseolus vulgaris
Phvul.003G238100 5.0kb downstream 5.0kb downstream 7216 true Chr03: 47207957-47215172 Phaseolus vulgaris
Phvul.003G238100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47207957-47212956 Phaseolus vulgaris
Phvul.003G238100 10.0kb upstream 10.0kb upstream 12216 true Chr03: 47212957-47225172 Phaseolus vulgaris
Phvul.003G238100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47215173-47225172 Phaseolus vulgaris
Phvul.003G238100 10.0kb downstream 10.0kb downstream 12216 true Chr03: 47202957-47215172 Phaseolus vulgaris
Phvul.003G238100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47202957-47212956 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041067 5273 Angiosperm View MSA
122309816 5265 Fabidae View MSA
124070249 5270 Rosid View MSA
123737389 5271 Pentapetalae View MSA
122790408 5272 Eudicot View MSA
121347266 5274 Embryophyte View MSA
123380522 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0604487 0.0 0.259929 Low Low
cufflinks 0.0417439 0.0 0.185781 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.6076 0.0 5.17341    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.79924 0.0 18.5156   High
cufflinks 2.62057 0.0 7.81615    
cufflinks 2.9443 0.0 8.69464    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.47001 0.0 4.73923    

0 Strain