Gene : Phvul.003G292400 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  2972
Name:  ? Phvul.003G292400 Secondary Identifier:  ? PAC:37147423
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G292400 0.5kb upstream 0.5kb upstream 1411 true Chr03: 52992603-52994013 Phaseolus vulgaris
Phvul.003G292400 0.5kb upstream 0.5kb upstream 500 false Chr03: 52992603-52993102 Phaseolus vulgaris
Phvul.003G292400 0.5kb downstream 0.5kb downstream 1411 true Chr03: 52993103-52994513 Phaseolus vulgaris
Phvul.003G292400 0.5kb downstream 0.5kb downstream 500 false Chr03: 52994014-52994513 Phaseolus vulgaris
Phvul.003G292400 1.0kb upstream 1.0kb upstream 1911 true Chr03: 52992103-52994013 Phaseolus vulgaris
Phvul.003G292400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52992103-52993102 Phaseolus vulgaris
Phvul.003G292400 1.0kb downstream 1.0kb downstream 1911 true Chr03: 52993103-52995013 Phaseolus vulgaris
Phvul.003G292400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52994014-52995013 Phaseolus vulgaris
Phvul.003G292400 2.0kb upstream 2.0kb upstream 2911 true Chr03: 52991103-52994013 Phaseolus vulgaris
Phvul.003G292400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52991103-52993102 Phaseolus vulgaris
Phvul.003G292400 2.0kb downstream 2.0kb downstream 2911 true Chr03: 52993103-52996013 Phaseolus vulgaris
Phvul.003G292400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52994014-52996013 Phaseolus vulgaris
Phvul.003G292400 5.0kb upstream 5.0kb upstream 5911 true Chr03: 52988103-52994013 Phaseolus vulgaris
Phvul.003G292400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52988103-52993102 Phaseolus vulgaris
Phvul.003G292400 5.0kb downstream 5.0kb downstream 5911 true Chr03: 52993103-52999013 Phaseolus vulgaris
Phvul.003G292400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52994014-52999013 Phaseolus vulgaris
Phvul.003G292400 10.0kb upstream 10.0kb upstream 10911 true Chr03: 52983103-52994013 Phaseolus vulgaris
Phvul.003G292400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52983103-52993102 Phaseolus vulgaris
Phvul.003G292400 10.0kb downstream 10.0kb downstream 10911 true Chr03: 52993103-53004013 Phaseolus vulgaris
Phvul.003G292400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52994014-53004013 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302794 5265 Fabidae View MSA
124073164 5270 Rosid View MSA
123751106 5271 Pentapetalae View MSA
122797584 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.332447 0.0 1.31384 Low  
cufflinks 0.0900724 0.0 0.400867 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.24569 0.0 0.985018 Low  
cufflinks 0.0961883 0.0 0.421292 Low  
cufflinks 0.125492 0.0 0.541486 Low  
cufflinks 4.68468 0.0 14.1166   High
cufflinks 1.92404 0.0 6.5061    
cufflinks 0.099325 0.0 0.431362 Low  
cufflinks 9.43281 0.0 26.7794   High
cufflinks 0.114815 0.0 0.49413 Low  

0 Strain