Gene : Phvul.003G295700 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3005
Name:  ? Phvul.003G295700 Secondary Identifier:  ? PAC:37147651
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G295700 0.5kb upstream 0.5kb upstream 14497 true Chr03: 53246449-53260945 Phaseolus vulgaris
Phvul.003G295700 0.5kb upstream 0.5kb upstream 500 false Chr03: 53246449-53246948 Phaseolus vulgaris
Phvul.003G295700 0.5kb downstream 0.5kb downstream 14497 true Chr03: 53246949-53261445 Phaseolus vulgaris
Phvul.003G295700 0.5kb downstream 0.5kb downstream 500 false Chr03: 53260946-53261445 Phaseolus vulgaris
Phvul.003G295700 1.0kb upstream 1.0kb upstream 14997 true Chr03: 53245949-53260945 Phaseolus vulgaris
Phvul.003G295700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 53245949-53246948 Phaseolus vulgaris
Phvul.003G295700 1.0kb downstream 1.0kb downstream 14997 true Chr03: 53246949-53261945 Phaseolus vulgaris
Phvul.003G295700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 53260946-53261945 Phaseolus vulgaris
Phvul.003G295700 2.0kb upstream 2.0kb upstream 15997 true Chr03: 53244949-53260945 Phaseolus vulgaris
Phvul.003G295700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 53244949-53246948 Phaseolus vulgaris
Phvul.003G295700 2.0kb downstream 2.0kb downstream 15997 true Chr03: 53246949-53262945 Phaseolus vulgaris
Phvul.003G295700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 53260946-53262945 Phaseolus vulgaris
Phvul.003G295700 5.0kb upstream 5.0kb upstream 18997 true Chr03: 53241949-53260945 Phaseolus vulgaris
Phvul.003G295700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 53241949-53246948 Phaseolus vulgaris
Phvul.003G295700 5.0kb downstream 5.0kb downstream 18997 true Chr03: 53246949-53265945 Phaseolus vulgaris
Phvul.003G295700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 53260946-53265945 Phaseolus vulgaris
Phvul.003G295700 10.0kb upstream 10.0kb upstream 23997 true Chr03: 53236949-53260945 Phaseolus vulgaris
Phvul.003G295700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 53236949-53246948 Phaseolus vulgaris
Phvul.003G295700 10.0kb downstream 10.0kb downstream 23997 true Chr03: 53246949-53270945 Phaseolus vulgaris
Phvul.003G295700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 53260946-53270945 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306882 5265 Fabidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.803655 0.0 3.11195    
cufflinks 1.51693 0.0 6.49712    
cufflinks 1.8322 0.0 7.32862    
cufflinks 0.469129 0.0 2.09284 Low Low
cufflinks 0.702477 0.0 2.87084   Low
cufflinks 1.60265 0.0 6.66973    
cufflinks 1.44825 0.0 4.88438    
cufflinks 2.16171 0.0 8.47297   High
cufflinks 1.14099 0.0 5.36842    
cufflinks 1.29419 0.0 5.81827    
cufflinks 0.956842 0.0 4.69419    

0 Strain