Gene : Phvul.003G242000 P. vulgaris v2.1
Defline:  (1 of 1) K13717 - OTU domain-containing protein 3 [EC:3.4.19.12] (OTUD3) Genomic Order:  2453
Name:  ? Phvul.003G242000 Secondary Identifier:  ? PAC:37147845
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G242000 0.5kb upstream 0.5kb upstream 9655 true Chr03: 47690291-47699945 Phaseolus vulgaris
Phvul.003G242000 0.5kb upstream 0.5kb upstream 500 false Chr03: 47699446-47699945 Phaseolus vulgaris
Phvul.003G242000 0.5kb downstream 0.5kb downstream 9655 true Chr03: 47689791-47699445 Phaseolus vulgaris
Phvul.003G242000 0.5kb downstream 0.5kb downstream 500 false Chr03: 47689791-47690290 Phaseolus vulgaris
Phvul.003G242000 1.0kb upstream 1.0kb upstream 10155 true Chr03: 47690291-47700445 Phaseolus vulgaris
Phvul.003G242000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47699446-47700445 Phaseolus vulgaris
Phvul.003G242000 1.0kb downstream 1.0kb downstream 10155 true Chr03: 47689291-47699445 Phaseolus vulgaris
Phvul.003G242000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47689291-47690290 Phaseolus vulgaris
Phvul.003G242000 2.0kb upstream 2.0kb upstream 11155 true Chr03: 47690291-47701445 Phaseolus vulgaris
Phvul.003G242000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47699446-47701445 Phaseolus vulgaris
Phvul.003G242000 2.0kb downstream 2.0kb downstream 11155 true Chr03: 47688291-47699445 Phaseolus vulgaris
Phvul.003G242000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47688291-47690290 Phaseolus vulgaris
Phvul.003G242000 5.0kb upstream 5.0kb upstream 14155 true Chr03: 47690291-47704445 Phaseolus vulgaris
Phvul.003G242000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47699446-47704445 Phaseolus vulgaris
Phvul.003G242000 5.0kb downstream 5.0kb downstream 14155 true Chr03: 47685291-47699445 Phaseolus vulgaris
Phvul.003G242000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47685291-47690290 Phaseolus vulgaris
Phvul.003G242000 10.0kb upstream 10.0kb upstream 19155 true Chr03: 47690291-47709445 Phaseolus vulgaris
Phvul.003G242000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47699446-47709445 Phaseolus vulgaris
Phvul.003G242000 10.0kb downstream 10.0kb downstream 19155 true Chr03: 47680291-47699445 Phaseolus vulgaris
Phvul.003G242000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47680291-47690290 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296228 5265 Fabidae View MSA
124066483 5270 Rosid View MSA
123745546 5271 Pentapetalae View MSA
122787389 5272 Eudicot View MSA
122041608 5273 Angiosperm View MSA
121347051 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.866436 0.0 3.50453   Low
cufflinks 1.45785 0.0 5.07945    
cufflinks 2.06702 0.0 6.703    
cufflinks 0.697149 0.0 2.99677   Low
cufflinks 1.60716 0.0 5.61517    
cufflinks 2.10703 0.0 6.85567    
cufflinks 2.02004 0.0 6.56691    
cufflinks 2.27482 0.0 9.18983    
cufflinks 1.59463 0.0 5.49711    
cufflinks 2.97792 0.0 11.1162   High
cufflinks 1.47377 0.0 5.15973    

0 Strain