Gene : Phvul.003G296700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13077:SF6 - 15 KDA SELENOPROTEIN Genomic Order:  3015
Name:  ? Phvul.003G296700 Secondary Identifier:  ? PAC:37145653
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G296700 0.5kb upstream 0.5kb upstream 3148 true Chr03: 53351472-53354619 Phaseolus vulgaris
Phvul.003G296700 0.5kb upstream 0.5kb upstream 500 false Chr03: 53354120-53354619 Phaseolus vulgaris
Phvul.003G296700 0.5kb downstream 0.5kb downstream 3148 true Chr03: 53350972-53354119 Phaseolus vulgaris
Phvul.003G296700 0.5kb downstream 0.5kb downstream 500 false Chr03: 53350972-53351471 Phaseolus vulgaris
Phvul.003G296700 1.0kb upstream 1.0kb upstream 3648 true Chr03: 53351472-53355119 Phaseolus vulgaris
Phvul.003G296700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 53354120-53355119 Phaseolus vulgaris
Phvul.003G296700 1.0kb downstream 1.0kb downstream 3648 true Chr03: 53350472-53354119 Phaseolus vulgaris
Phvul.003G296700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 53350472-53351471 Phaseolus vulgaris
Phvul.003G296700 2.0kb upstream 2.0kb upstream 4648 true Chr03: 53351472-53356119 Phaseolus vulgaris
Phvul.003G296700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 53354120-53356119 Phaseolus vulgaris
Phvul.003G296700 2.0kb downstream 2.0kb downstream 4648 true Chr03: 53349472-53354119 Phaseolus vulgaris
Phvul.003G296700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 53349472-53351471 Phaseolus vulgaris
Phvul.003G296700 5.0kb upstream 5.0kb upstream 7648 true Chr03: 53351472-53359119 Phaseolus vulgaris
Phvul.003G296700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 53354120-53359119 Phaseolus vulgaris
Phvul.003G296700 5.0kb downstream 5.0kb downstream 7648 true Chr03: 53346472-53354119 Phaseolus vulgaris
Phvul.003G296700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 53346472-53351471 Phaseolus vulgaris
Phvul.003G296700 10.0kb upstream 10.0kb upstream 12648 true Chr03: 53351472-53364119 Phaseolus vulgaris
Phvul.003G296700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 53354120-53364119 Phaseolus vulgaris
Phvul.003G296700 10.0kb downstream 10.0kb downstream 12648 true Chr03: 53341472-53354119 Phaseolus vulgaris
Phvul.003G296700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 53341472-53351471 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309098 5265 Fabidae View MSA
124066908 5270 Rosid View MSA
123736516 5271 Pentapetalae View MSA
122788983 5272 Eudicot View MSA
122044015 5273 Angiosperm View MSA
121346057 5274 Embryophyte View MSA
123424520 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.0547 0.0 123.521 High High
cufflinks 23.0932 0.0 73.0883    
cufflinks 28.8957 0.0 99.5739    
cufflinks 42.3055 0.0 141.55 High High
cufflinks 21.5947 0.0 80.0093    
cufflinks 23.953 0.0 85.7963    
cufflinks 17.0296 0.0 66.8437   Low
cufflinks 21.8383 0.0 80.578    
cufflinks 21.207 0.0 80.2835    
cufflinks 17.0444 0.0 65.2548   Low
cufflinks 23.0349 0.0 84.3567    

0 Strain