Gene : Phvul.004G000500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE // SUBFAMILY NOT NAMED Genomic Order:  12
Name:  ? Phvul.004G000500 Secondary Identifier:  ? PAC:37162037
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5129 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6483 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G000500 0.5kb upstream 0.5kb upstream 6473 true Chr04: 74735-81207 Phaseolus vulgaris
Phvul.004G000500 0.5kb upstream 0.5kb upstream 500 false Chr04: 74735-75234 Phaseolus vulgaris
Phvul.004G000500 0.5kb downstream 0.5kb downstream 6473 true Chr04: 75235-81707 Phaseolus vulgaris
Phvul.004G000500 0.5kb downstream 0.5kb downstream 500 false Chr04: 81208-81707 Phaseolus vulgaris
Phvul.004G000500 1.0kb upstream 1.0kb upstream 6973 true Chr04: 74235-81207 Phaseolus vulgaris
Phvul.004G000500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 74235-75234 Phaseolus vulgaris
Phvul.004G000500 1.0kb downstream 1.0kb downstream 6973 true Chr04: 75235-82207 Phaseolus vulgaris
Phvul.004G000500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 81208-82207 Phaseolus vulgaris
Phvul.004G000500 2.0kb upstream 2.0kb upstream 7973 true Chr04: 73235-81207 Phaseolus vulgaris
Phvul.004G000500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 73235-75234 Phaseolus vulgaris
Phvul.004G000500 2.0kb downstream 2.0kb downstream 7973 true Chr04: 75235-83207 Phaseolus vulgaris
Phvul.004G000500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 81208-83207 Phaseolus vulgaris
Phvul.004G000500 5.0kb upstream 5.0kb upstream 10973 true Chr04: 70235-81207 Phaseolus vulgaris
Phvul.004G000500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 70235-75234 Phaseolus vulgaris
Phvul.004G000500 5.0kb downstream 5.0kb downstream 10973 true Chr04: 75235-86207 Phaseolus vulgaris
Phvul.004G000500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 81208-86207 Phaseolus vulgaris
Phvul.004G000500 10.0kb upstream 10.0kb upstream 15973 true Chr04: 65235-81207 Phaseolus vulgaris
Phvul.004G000500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 65235-75234 Phaseolus vulgaris
Phvul.004G000500 10.0kb downstream 10.0kb downstream 15973 true Chr04: 75235-91207 Phaseolus vulgaris
Phvul.004G000500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 81208-91207 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302965 5265 Fabidae View MSA
124074924 5270 Rosid View MSA
123752126 5271 Pentapetalae View MSA
122793643 5272 Eudicot View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6244 0.0 27.5737   Low
cufflinks 15.3921 0.0 39.7909    
cufflinks 17.2442 0.0 44.6444    
cufflinks 13.2407 0.0 34.2547   Low
cufflinks 22.8239 0.0 59.4339    
cufflinks 17.4862 0.0 45.2673    
cufflinks 19.0488 0.0 49.4192    
cufflinks 14.4429 0.0 37.3338    
cufflinks 27.4469 0.0 72.2339   High
cufflinks 23.1646 0.0 60.4605    
cufflinks 21.3697 0.0 55.5395    

0 Strain