Gene : Phvul.003G285100 P. vulgaris v2.1
Defline:  (1 of 1) 1.3.1.91 - tRNA-dihydrouridine(20) synthase (NAD(P)(+)) / tRNA-dihydrouridine synthase 2 Genomic Order:  2898
Name:  ? Phvul.003G285100 Secondary Identifier:  ? PAC:37147565
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G285100 0.5kb upstream 0.5kb upstream 7945 true Chr03: 52282119-52290063 Phaseolus vulgaris
Phvul.003G285100 0.5kb upstream 0.5kb upstream 500 false Chr03: 52289564-52290063 Phaseolus vulgaris
Phvul.003G285100 0.5kb downstream 0.5kb downstream 7945 true Chr03: 52281619-52289563 Phaseolus vulgaris
Phvul.003G285100 0.5kb downstream 0.5kb downstream 500 false Chr03: 52281619-52282118 Phaseolus vulgaris
Phvul.003G285100 1.0kb upstream 1.0kb upstream 8445 true Chr03: 52282119-52290563 Phaseolus vulgaris
Phvul.003G285100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52289564-52290563 Phaseolus vulgaris
Phvul.003G285100 1.0kb downstream 1.0kb downstream 8445 true Chr03: 52281119-52289563 Phaseolus vulgaris
Phvul.003G285100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52281119-52282118 Phaseolus vulgaris
Phvul.003G285100 2.0kb upstream 2.0kb upstream 9445 true Chr03: 52282119-52291563 Phaseolus vulgaris
Phvul.003G285100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52289564-52291563 Phaseolus vulgaris
Phvul.003G285100 2.0kb downstream 2.0kb downstream 9445 true Chr03: 52280119-52289563 Phaseolus vulgaris
Phvul.003G285100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52280119-52282118 Phaseolus vulgaris
Phvul.003G285100 5.0kb upstream 5.0kb upstream 12445 true Chr03: 52282119-52294563 Phaseolus vulgaris
Phvul.003G285100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52289564-52294563 Phaseolus vulgaris
Phvul.003G285100 5.0kb downstream 5.0kb downstream 12445 true Chr03: 52277119-52289563 Phaseolus vulgaris
Phvul.003G285100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52277119-52282118 Phaseolus vulgaris
Phvul.003G285100 10.0kb upstream 10.0kb upstream 17445 true Chr03: 52282119-52299563 Phaseolus vulgaris
Phvul.003G285100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52289564-52299563 Phaseolus vulgaris
Phvul.003G285100 10.0kb downstream 10.0kb downstream 17445 true Chr03: 52272119-52289563 Phaseolus vulgaris
Phvul.003G285100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52272119-52282118 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308273 5265 Fabidae View MSA
124050521 5270 Rosid View MSA
123743587 5271 Pentapetalae View MSA
122794632 5272 Eudicot View MSA
122048922 5273 Angiosperm View MSA
121348222 5274 Embryophyte View MSA
123428585 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.90482 0.0 18.2007    
cufflinks 3.4468 0.0 15.0172    
cufflinks 6.82494 0.0 23.9839   High
cufflinks 3.89058 0.0 12.6966    
cufflinks 3.02075 0.0 10.3088    
cufflinks 4.58709 0.0 17.282    
cufflinks 4.82936 0.0 18.9937    
cufflinks 4.15047 0.0 16.7637    
cufflinks 4.01646 0.0 12.8008    
cufflinks 2.21577 0.0 10.4962   Low
cufflinks 2.29137 0.0 8.15089   Low

0 Strain