Gene : Phvul.003G286600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  2913
Name:  ? Phvul.003G286600 Secondary Identifier:  ? PAC:37145644
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-2161 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3841 Phaseolus vulgaris pathologic  
Pvulgaris SER-GLYSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G286600 0.5kb upstream 0.5kb upstream 5929 true Chr03: 52434195-52440123 Phaseolus vulgaris
Phvul.003G286600 0.5kb upstream 0.5kb upstream 500 false Chr03: 52439624-52440123 Phaseolus vulgaris
Phvul.003G286600 0.5kb downstream 0.5kb downstream 5929 true Chr03: 52433695-52439623 Phaseolus vulgaris
Phvul.003G286600 0.5kb downstream 0.5kb downstream 500 false Chr03: 52433695-52434194 Phaseolus vulgaris
Phvul.003G286600 1.0kb upstream 1.0kb upstream 6429 true Chr03: 52434195-52440623 Phaseolus vulgaris
Phvul.003G286600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52439624-52440623 Phaseolus vulgaris
Phvul.003G286600 1.0kb downstream 1.0kb downstream 6429 true Chr03: 52433195-52439623 Phaseolus vulgaris
Phvul.003G286600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52433195-52434194 Phaseolus vulgaris
Phvul.003G286600 2.0kb upstream 2.0kb upstream 7429 true Chr03: 52434195-52441623 Phaseolus vulgaris
Phvul.003G286600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52439624-52441623 Phaseolus vulgaris
Phvul.003G286600 2.0kb downstream 2.0kb downstream 7429 true Chr03: 52432195-52439623 Phaseolus vulgaris
Phvul.003G286600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52432195-52434194 Phaseolus vulgaris
Phvul.003G286600 5.0kb upstream 5.0kb upstream 10429 true Chr03: 52434195-52444623 Phaseolus vulgaris
Phvul.003G286600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52439624-52444623 Phaseolus vulgaris
Phvul.003G286600 5.0kb downstream 5.0kb downstream 10429 true Chr03: 52429195-52439623 Phaseolus vulgaris
Phvul.003G286600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52429195-52434194 Phaseolus vulgaris
Phvul.003G286600 10.0kb upstream 10.0kb upstream 15429 true Chr03: 52434195-52449623 Phaseolus vulgaris
Phvul.003G286600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52439624-52449623 Phaseolus vulgaris
Phvul.003G286600 10.0kb downstream 10.0kb downstream 15429 true Chr03: 52424195-52439623 Phaseolus vulgaris
Phvul.003G286600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52424195-52434194 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.72143 0.0 23.7043    
cufflinks 21.6282 0.0 70.2738    
cufflinks 746.584 0.0 8970.59 High High
cufflinks 6.83346 0.0 21.4254    
cufflinks 38.0329 0.0 109.356 High  
cufflinks 234.636 0.0 1411.2 High High
cufflinks 0.0672072 0.0 0.291403 Low Low
cufflinks 0.157089 0.0 0.623189 Low Low
cufflinks 0.183153 0.0 1.42563 Low Low
cufflinks 205.789 0.0 915.814 High  
cufflinks 21.9048 0.0 72.3495    

0 Strain