Gene : Phvul.003G290200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31384:SF5 - AUXIN RESPONSE FACTOR 3 Genomic Order:  2949
Name:  ? Phvul.003G290200 Secondary Identifier:  ? PAC:37148341
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G290200 0.5kb upstream 0.5kb upstream 5611 true Chr03: 52771765-52777375 Phaseolus vulgaris
Phvul.003G290200 0.5kb upstream 0.5kb upstream 500 false Chr03: 52771765-52772264 Phaseolus vulgaris
Phvul.003G290200 0.5kb downstream 0.5kb downstream 5611 true Chr03: 52772265-52777875 Phaseolus vulgaris
Phvul.003G290200 0.5kb downstream 0.5kb downstream 500 false Chr03: 52777376-52777875 Phaseolus vulgaris
Phvul.003G290200 1.0kb upstream 1.0kb upstream 6111 true Chr03: 52771265-52777375 Phaseolus vulgaris
Phvul.003G290200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52771265-52772264 Phaseolus vulgaris
Phvul.003G290200 1.0kb downstream 1.0kb downstream 6111 true Chr03: 52772265-52778375 Phaseolus vulgaris
Phvul.003G290200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52777376-52778375 Phaseolus vulgaris
Phvul.003G290200 2.0kb upstream 2.0kb upstream 7111 true Chr03: 52770265-52777375 Phaseolus vulgaris
Phvul.003G290200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52770265-52772264 Phaseolus vulgaris
Phvul.003G290200 2.0kb downstream 2.0kb downstream 7111 true Chr03: 52772265-52779375 Phaseolus vulgaris
Phvul.003G290200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52777376-52779375 Phaseolus vulgaris
Phvul.003G290200 5.0kb upstream 5.0kb upstream 10111 true Chr03: 52767265-52777375 Phaseolus vulgaris
Phvul.003G290200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52767265-52772264 Phaseolus vulgaris
Phvul.003G290200 5.0kb downstream 5.0kb downstream 10111 true Chr03: 52772265-52782375 Phaseolus vulgaris
Phvul.003G290200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52777376-52782375 Phaseolus vulgaris
Phvul.003G290200 10.0kb upstream 10.0kb upstream 15111 true Chr03: 52762265-52777375 Phaseolus vulgaris
Phvul.003G290200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52762265-52772264 Phaseolus vulgaris
Phvul.003G290200 10.0kb downstream 10.0kb downstream 15111 true Chr03: 52772265-52787375 Phaseolus vulgaris
Phvul.003G290200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52777376-52787375 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309697 5265 Fabidae View MSA
124066070 5270 Rosid View MSA
123743796 5271 Pentapetalae View MSA
122795169 5272 Eudicot View MSA
122043529 5273 Angiosperm View MSA
121310144 5274 Embryophyte View MSA
123347713 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.58012 0.0 12.5209    
cufflinks 5.88223 0.0 15.7449    
cufflinks 5.21718 0.0 14.0853    
cufflinks 5.41264 0.0 14.6372    
cufflinks 12.7241 0.0 32.9153   High
cufflinks 7.90293 0.0 20.7351    
cufflinks 5.24165 0.0 14.121    
cufflinks 5.16862 0.0 13.9333    
cufflinks 4.75782 0.0 12.9407    
cufflinks 5.78878 0.0 15.5307    
cufflinks 20.508 0.0 53.3121   High

0 Strain