Gene : Phvul.003G287800 P. vulgaris v2.1
Defline:  (1 of 6) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2925
Name:  ? Phvul.003G287800 Secondary Identifier:  ? PAC:37148363
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G287800 0.5kb upstream 0.5kb upstream 3988 true Chr03: 52540297-52544284 Phaseolus vulgaris
Phvul.003G287800 0.5kb upstream 0.5kb upstream 500 false Chr03: 52540297-52540796 Phaseolus vulgaris
Phvul.003G287800 0.5kb downstream 0.5kb downstream 3988 true Chr03: 52540797-52544784 Phaseolus vulgaris
Phvul.003G287800 0.5kb downstream 0.5kb downstream 500 false Chr03: 52544285-52544784 Phaseolus vulgaris
Phvul.003G287800 1.0kb upstream 1.0kb upstream 4488 true Chr03: 52539797-52544284 Phaseolus vulgaris
Phvul.003G287800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52539797-52540796 Phaseolus vulgaris
Phvul.003G287800 1.0kb downstream 1.0kb downstream 4488 true Chr03: 52540797-52545284 Phaseolus vulgaris
Phvul.003G287800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52544285-52545284 Phaseolus vulgaris
Phvul.003G287800 2.0kb upstream 2.0kb upstream 5488 true Chr03: 52538797-52544284 Phaseolus vulgaris
Phvul.003G287800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52538797-52540796 Phaseolus vulgaris
Phvul.003G287800 2.0kb downstream 2.0kb downstream 5488 true Chr03: 52540797-52546284 Phaseolus vulgaris
Phvul.003G287800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52544285-52546284 Phaseolus vulgaris
Phvul.003G287800 5.0kb upstream 5.0kb upstream 8488 true Chr03: 52535797-52544284 Phaseolus vulgaris
Phvul.003G287800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52535797-52540796 Phaseolus vulgaris
Phvul.003G287800 5.0kb downstream 5.0kb downstream 8488 true Chr03: 52540797-52549284 Phaseolus vulgaris
Phvul.003G287800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52544285-52549284 Phaseolus vulgaris
Phvul.003G287800 10.0kb upstream 10.0kb upstream 13488 true Chr03: 52530797-52544284 Phaseolus vulgaris
Phvul.003G287800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52530797-52540796 Phaseolus vulgaris
Phvul.003G287800 10.0kb downstream 10.0kb downstream 13488 true Chr03: 52540797-52554284 Phaseolus vulgaris
Phvul.003G287800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52544285-52554284 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301533 5265 Fabidae View MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.15126 0.0 3.67601    
cufflinks 1.08861 0.0 3.4965    
cufflinks 0.240028 0.0 0.899016 Low Low
cufflinks 0.838667 0.0 2.79    
cufflinks 1.84059 0.0 5.60586    
cufflinks 3.0206 0.0 8.63969    
cufflinks 29.9349 0.0 79.1881 High High
cufflinks 13.1374 0.0 33.9764    
cufflinks 43.6726 0.0 119.195 High High
cufflinks 7.62956 0.0 20.2182    
cufflinks 4.50083 0.0 12.4629    

0 Strain