Gene : Phvul.003G288900 P. vulgaris v2.1
Defline:  (1 of 2) K14800 - pre-rRNA-processing protein TSR2 (TSR2) Genomic Order:  2936
Name:  ? Phvul.003G288900 Secondary Identifier:  ? PAC:37145700
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G288900 0.5kb upstream 0.5kb upstream 2345 true Chr03: 52639839-52642183 Phaseolus vulgaris
Phvul.003G288900 0.5kb upstream 0.5kb upstream 500 false Chr03: 52639839-52640338 Phaseolus vulgaris
Phvul.003G288900 0.5kb downstream 0.5kb downstream 2345 true Chr03: 52640339-52642683 Phaseolus vulgaris
Phvul.003G288900 0.5kb downstream 0.5kb downstream 500 false Chr03: 52642184-52642683 Phaseolus vulgaris
Phvul.003G288900 1.0kb upstream 1.0kb upstream 2845 true Chr03: 52639339-52642183 Phaseolus vulgaris
Phvul.003G288900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52639339-52640338 Phaseolus vulgaris
Phvul.003G288900 1.0kb downstream 1.0kb downstream 2845 true Chr03: 52640339-52643183 Phaseolus vulgaris
Phvul.003G288900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52642184-52643183 Phaseolus vulgaris
Phvul.003G288900 2.0kb upstream 2.0kb upstream 3845 true Chr03: 52638339-52642183 Phaseolus vulgaris
Phvul.003G288900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52638339-52640338 Phaseolus vulgaris
Phvul.003G288900 2.0kb downstream 2.0kb downstream 3845 true Chr03: 52640339-52644183 Phaseolus vulgaris
Phvul.003G288900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52642184-52644183 Phaseolus vulgaris
Phvul.003G288900 5.0kb upstream 5.0kb upstream 6845 true Chr03: 52635339-52642183 Phaseolus vulgaris
Phvul.003G288900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52635339-52640338 Phaseolus vulgaris
Phvul.003G288900 5.0kb downstream 5.0kb downstream 6845 true Chr03: 52640339-52647183 Phaseolus vulgaris
Phvul.003G288900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52642184-52647183 Phaseolus vulgaris
Phvul.003G288900 10.0kb upstream 10.0kb upstream 11845 true Chr03: 52630339-52642183 Phaseolus vulgaris
Phvul.003G288900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52630339-52640338 Phaseolus vulgaris
Phvul.003G288900 10.0kb downstream 10.0kb downstream 11845 true Chr03: 52640339-52652183 Phaseolus vulgaris
Phvul.003G288900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52642184-52652183 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303762 5265 Fabidae View MSA
124050746 5270 Rosid View MSA
123739382 5271 Pentapetalae View MSA
122787946 5272 Eudicot View MSA
122047443 5273 Angiosperm View MSA
121347527 5274 Embryophyte View MSA
123424114 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.9435 0.0 66.8883    
cufflinks 32.1353 0.0 84.8854   High
cufflinks 20.3155 0.0 55.5186    
cufflinks 29.4044 0.0 78.417   High
cufflinks 25.2192 0.0 68.1323    
cufflinks 16.8293 0.0 46.8296   Low
cufflinks 18.4559 0.0 50.855   Low
cufflinks 24.5884 0.0 66.0495    
cufflinks 22.9966 0.0 62.1774    
cufflinks 19.2748 0.0 52.9871    
cufflinks 24.2758 0.0 65.5695    

0 Strain