Gene : Phvul.003G291100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22957//PTHR22957:SF329 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2959
Name:  ? Phvul.003G291100 Secondary Identifier:  ? PAC:37145962
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G291100 0.5kb upstream 0.5kb upstream 7643 true Chr03: 52851991-52859633 Phaseolus vulgaris
Phvul.003G291100 0.5kb upstream 0.5kb upstream 500 false Chr03: 52851991-52852490 Phaseolus vulgaris
Phvul.003G291100 0.5kb downstream 0.5kb downstream 7643 true Chr03: 52852491-52860133 Phaseolus vulgaris
Phvul.003G291100 0.5kb downstream 0.5kb downstream 500 false Chr03: 52859634-52860133 Phaseolus vulgaris
Phvul.003G291100 1.0kb upstream 1.0kb upstream 8143 true Chr03: 52851491-52859633 Phaseolus vulgaris
Phvul.003G291100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52851491-52852490 Phaseolus vulgaris
Phvul.003G291100 1.0kb downstream 1.0kb downstream 8143 true Chr03: 52852491-52860633 Phaseolus vulgaris
Phvul.003G291100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52859634-52860633 Phaseolus vulgaris
Phvul.003G291100 2.0kb upstream 2.0kb upstream 9143 true Chr03: 52850491-52859633 Phaseolus vulgaris
Phvul.003G291100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52850491-52852490 Phaseolus vulgaris
Phvul.003G291100 2.0kb downstream 2.0kb downstream 9143 true Chr03: 52852491-52861633 Phaseolus vulgaris
Phvul.003G291100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52859634-52861633 Phaseolus vulgaris
Phvul.003G291100 5.0kb upstream 5.0kb upstream 12143 true Chr03: 52847491-52859633 Phaseolus vulgaris
Phvul.003G291100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52847491-52852490 Phaseolus vulgaris
Phvul.003G291100 5.0kb downstream 5.0kb downstream 12143 true Chr03: 52852491-52864633 Phaseolus vulgaris
Phvul.003G291100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52859634-52864633 Phaseolus vulgaris
Phvul.003G291100 10.0kb upstream 10.0kb upstream 17143 true Chr03: 52842491-52859633 Phaseolus vulgaris
Phvul.003G291100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52842491-52852490 Phaseolus vulgaris
Phvul.003G291100 10.0kb downstream 10.0kb downstream 17143 true Chr03: 52852491-52869633 Phaseolus vulgaris
Phvul.003G291100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52859634-52869633 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301708 5265 Fabidae View MSA
124070393 5270 Rosid View MSA
123742752 5271 Pentapetalae View MSA
122794560 5272 Eudicot View MSA
122050353 5273 Angiosperm View MSA
121347647 5274 Embryophyte View MSA
123426413 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.31909 0.0 23.0232    
cufflinks 12.7275 0.0 34.1812   High
cufflinks 7.60615 0.0 21.3585   Low
cufflinks 10.6989 0.0 29.0489    
cufflinks 10.4193 0.0 28.4157    
cufflinks 8.54459 0.0 23.7689    
cufflinks 7.1595 0.0 20.2083   Low
cufflinks 8.12643 0.0 22.7089    
cufflinks 8.03218 0.0 22.4727    
cufflinks 11.0472 0.0 29.9826   High
cufflinks 9.69183 0.0 26.6503    

0 Strain