Gene : Phvul.003G290500 P. vulgaris v2.1
Defline:  (1 of 1) KOG2037 - Guanylate-binding protein Genomic Order:  2952
Name:  ? Phvul.003G290500 Secondary Identifier:  ? PAC:37145983
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G290500 0.5kb upstream 0.5kb upstream 8376 true Chr03: 52796318-52804693 Phaseolus vulgaris
Phvul.003G290500 0.5kb upstream 0.5kb upstream 500 false Chr03: 52796318-52796817 Phaseolus vulgaris
Phvul.003G290500 0.5kb downstream 0.5kb downstream 8376 true Chr03: 52796818-52805193 Phaseolus vulgaris
Phvul.003G290500 0.5kb downstream 0.5kb downstream 500 false Chr03: 52804694-52805193 Phaseolus vulgaris
Phvul.003G290500 1.0kb upstream 1.0kb upstream 8876 true Chr03: 52795818-52804693 Phaseolus vulgaris
Phvul.003G290500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52795818-52796817 Phaseolus vulgaris
Phvul.003G290500 1.0kb downstream 1.0kb downstream 8876 true Chr03: 52796818-52805693 Phaseolus vulgaris
Phvul.003G290500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52804694-52805693 Phaseolus vulgaris
Phvul.003G290500 2.0kb upstream 2.0kb upstream 9876 true Chr03: 52794818-52804693 Phaseolus vulgaris
Phvul.003G290500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52794818-52796817 Phaseolus vulgaris
Phvul.003G290500 2.0kb downstream 2.0kb downstream 9876 true Chr03: 52796818-52806693 Phaseolus vulgaris
Phvul.003G290500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52804694-52806693 Phaseolus vulgaris
Phvul.003G290500 5.0kb upstream 5.0kb upstream 12876 true Chr03: 52791818-52804693 Phaseolus vulgaris
Phvul.003G290500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52791818-52796817 Phaseolus vulgaris
Phvul.003G290500 5.0kb downstream 5.0kb downstream 12876 true Chr03: 52796818-52809693 Phaseolus vulgaris
Phvul.003G290500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52804694-52809693 Phaseolus vulgaris
Phvul.003G290500 10.0kb upstream 10.0kb upstream 17876 true Chr03: 52786818-52804693 Phaseolus vulgaris
Phvul.003G290500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52786818-52796817 Phaseolus vulgaris
Phvul.003G290500 10.0kb downstream 10.0kb downstream 17876 true Chr03: 52796818-52814693 Phaseolus vulgaris
Phvul.003G290500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52804694-52814693 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300087 5265 Fabidae View MSA
124050265 5270 Rosid View MSA
123747703 5271 Pentapetalae View MSA
122791372 5272 Eudicot View MSA
122041640 5273 Angiosperm View MSA
121347884 5274 Embryophyte View MSA
123426529 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.2074 0.0 23.8148   Low
cufflinks 20.9187 0.0 55.2934    
cufflinks 23.3756 0.0 62.3761    
cufflinks 7.73053 0.0 20.1044   Low
cufflinks 19.8364 0.0 52.0381    
cufflinks 27.1166 0.0 73.2185    
cufflinks 28.8515 0.0 78.5327 High  
cufflinks 20.8173 0.0 55.2535    
cufflinks 31.5239 0.0 86.4295 High  
cufflinks 35.0701 0.0 96.761   High
cufflinks 18.2172 0.0 47.6757    

0 Strain