Gene : Phvul.003G290600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF41 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2953
Name:  ? Phvul.003G290600 Secondary Identifier:  ? PAC:37145902
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G290600 0.5kb upstream 0.5kb upstream 3980 true Chr03: 52806174-52810153 Phaseolus vulgaris
Phvul.003G290600 0.5kb upstream 0.5kb upstream 500 false Chr03: 52809654-52810153 Phaseolus vulgaris
Phvul.003G290600 0.5kb downstream 0.5kb downstream 3980 true Chr03: 52805674-52809653 Phaseolus vulgaris
Phvul.003G290600 0.5kb downstream 0.5kb downstream 500 false Chr03: 52805674-52806173 Phaseolus vulgaris
Phvul.003G290600 1.0kb upstream 1.0kb upstream 4480 true Chr03: 52806174-52810653 Phaseolus vulgaris
Phvul.003G290600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52809654-52810653 Phaseolus vulgaris
Phvul.003G290600 1.0kb downstream 1.0kb downstream 4480 true Chr03: 52805174-52809653 Phaseolus vulgaris
Phvul.003G290600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52805174-52806173 Phaseolus vulgaris
Phvul.003G290600 2.0kb upstream 2.0kb upstream 5480 true Chr03: 52806174-52811653 Phaseolus vulgaris
Phvul.003G290600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52809654-52811653 Phaseolus vulgaris
Phvul.003G290600 2.0kb downstream 2.0kb downstream 5480 true Chr03: 52804174-52809653 Phaseolus vulgaris
Phvul.003G290600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52804174-52806173 Phaseolus vulgaris
Phvul.003G290600 5.0kb upstream 5.0kb upstream 8480 true Chr03: 52806174-52814653 Phaseolus vulgaris
Phvul.003G290600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52809654-52814653 Phaseolus vulgaris
Phvul.003G290600 5.0kb downstream 5.0kb downstream 8480 true Chr03: 52801174-52809653 Phaseolus vulgaris
Phvul.003G290600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52801174-52806173 Phaseolus vulgaris
Phvul.003G290600 10.0kb upstream 10.0kb upstream 13480 true Chr03: 52806174-52819653 Phaseolus vulgaris
Phvul.003G290600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52809654-52819653 Phaseolus vulgaris
Phvul.003G290600 10.0kb downstream 10.0kb downstream 13480 true Chr03: 52796174-52809653 Phaseolus vulgaris
Phvul.003G290600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52796174-52806173 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309823 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.24428 0.0 18.104   High
cufflinks 1.28299 0.0 4.71007    
cufflinks 4.10285 0.0 17.45   High
cufflinks 1.58738 0.0 9.16378    
cufflinks 0.174249 0.0 0.696457 Low Low
cufflinks 0.222119 0.0 0.868541 Low Low
cufflinks 2.31983 0.0 10.401    
cufflinks 1.10255 0.0 5.85126    
cufflinks 2.49982 0.0 8.1528    
cufflinks 1.16078 0.0 6.79663    
cufflinks 0.417817 0.0 3.24946 Low  

0 Strain