Gene : Phvul.003G254900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR16517:SF40 - TUBBY-LIKE F-BOX PROTEIN 11-RELATED Genomic Order:  2595
Name:  ? Phvul.003G254900 Secondary Identifier:  ? PAC:37144374
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G254900 0.5kb upstream 0.5kb upstream 8609 true Chr03: 49403905-49412513 Phaseolus vulgaris
Phvul.003G254900 0.5kb upstream 0.5kb upstream 500 false Chr03: 49412014-49412513 Phaseolus vulgaris
Phvul.003G254900 0.5kb downstream 0.5kb downstream 8609 true Chr03: 49403405-49412013 Phaseolus vulgaris
Phvul.003G254900 0.5kb downstream 0.5kb downstream 500 false Chr03: 49403405-49403904 Phaseolus vulgaris
Phvul.003G254900 1.0kb upstream 1.0kb upstream 9109 true Chr03: 49403905-49413013 Phaseolus vulgaris
Phvul.003G254900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 49412014-49413013 Phaseolus vulgaris
Phvul.003G254900 1.0kb downstream 1.0kb downstream 9109 true Chr03: 49402905-49412013 Phaseolus vulgaris
Phvul.003G254900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 49402905-49403904 Phaseolus vulgaris
Phvul.003G254900 2.0kb upstream 2.0kb upstream 10109 true Chr03: 49403905-49414013 Phaseolus vulgaris
Phvul.003G254900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 49412014-49414013 Phaseolus vulgaris
Phvul.003G254900 2.0kb downstream 2.0kb downstream 10109 true Chr03: 49401905-49412013 Phaseolus vulgaris
Phvul.003G254900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 49401905-49403904 Phaseolus vulgaris
Phvul.003G254900 5.0kb upstream 5.0kb upstream 13109 true Chr03: 49403905-49417013 Phaseolus vulgaris
Phvul.003G254900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 49412014-49417013 Phaseolus vulgaris
Phvul.003G254900 5.0kb downstream 5.0kb downstream 13109 true Chr03: 49398905-49412013 Phaseolus vulgaris
Phvul.003G254900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 49398905-49403904 Phaseolus vulgaris
Phvul.003G254900 10.0kb upstream 10.0kb upstream 18109 true Chr03: 49403905-49422013 Phaseolus vulgaris
Phvul.003G254900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 49412014-49422013 Phaseolus vulgaris
Phvul.003G254900 10.0kb downstream 10.0kb downstream 18109 true Chr03: 49393905-49412013 Phaseolus vulgaris
Phvul.003G254900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 49393905-49403904 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311486 5265 Fabidae View MSA
124064248 5270 Rosid View MSA
123747341 5271 Pentapetalae View MSA
122790799 5272 Eudicot View MSA
122049170 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121348967 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.0431 0.0 104.146    
cufflinks 28.0619 0.0 91.5285    
cufflinks 34.5122 0.0 107.637    
cufflinks 27.559 0.0 86.4281    
cufflinks 30.0562 0.0 94.5326    
cufflinks 30.5901 0.0 96.2145    
cufflinks 11.4542 0.0 34.7842   Low
cufflinks 10.1967 0.0 35.9649   Low
cufflinks 14.7316 0.0 48.559   Low
cufflinks 30.3742 0.0 94.7791    
cufflinks 31.8478 0.0 89.0458    

0 Strain