Gene : Phvul.003G253200 P. vulgaris v2.1
Defline:  (1 of 2) K00234 - succinate dehydrogenase (ubiquinone) flavoprotein subunit (SDHA, SDH1) Genomic Order:  2579
Name:  ? Phvul.003G253200 Secondary Identifier:  ? PAC:37145279
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3781 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4302 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7279 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G253200 0.5kb upstream 0.5kb upstream 11579 true Chr03: 49249099-49260677 Phaseolus vulgaris
Phvul.003G253200 0.5kb upstream 0.5kb upstream 500 false Chr03: 49249099-49249598 Phaseolus vulgaris
Phvul.003G253200 0.5kb downstream 0.5kb downstream 11579 true Chr03: 49249599-49261177 Phaseolus vulgaris
Phvul.003G253200 0.5kb downstream 0.5kb downstream 500 false Chr03: 49260678-49261177 Phaseolus vulgaris
Phvul.003G253200 1.0kb upstream 1.0kb upstream 12079 true Chr03: 49248599-49260677 Phaseolus vulgaris
Phvul.003G253200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 49248599-49249598 Phaseolus vulgaris
Phvul.003G253200 1.0kb downstream 1.0kb downstream 12079 true Chr03: 49249599-49261677 Phaseolus vulgaris
Phvul.003G253200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 49260678-49261677 Phaseolus vulgaris
Phvul.003G253200 2.0kb upstream 2.0kb upstream 13079 true Chr03: 49247599-49260677 Phaseolus vulgaris
Phvul.003G253200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 49247599-49249598 Phaseolus vulgaris
Phvul.003G253200 2.0kb downstream 2.0kb downstream 13079 true Chr03: 49249599-49262677 Phaseolus vulgaris
Phvul.003G253200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 49260678-49262677 Phaseolus vulgaris
Phvul.003G253200 5.0kb upstream 5.0kb upstream 16079 true Chr03: 49244599-49260677 Phaseolus vulgaris
Phvul.003G253200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 49244599-49249598 Phaseolus vulgaris
Phvul.003G253200 5.0kb downstream 5.0kb downstream 16079 true Chr03: 49249599-49265677 Phaseolus vulgaris
Phvul.003G253200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 49260678-49265677 Phaseolus vulgaris
Phvul.003G253200 10.0kb upstream 10.0kb upstream 21079 true Chr03: 49239599-49260677 Phaseolus vulgaris
Phvul.003G253200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 49239599-49249598 Phaseolus vulgaris
Phvul.003G253200 10.0kb downstream 10.0kb downstream 21079 true Chr03: 49249599-49270677 Phaseolus vulgaris
Phvul.003G253200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 49260678-49270677 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310620 5265 Fabidae View MSA
124063356 5270 Rosid View MSA
123753034 5271 Pentapetalae View MSA
122790960 5272 Eudicot View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.8691 0.0 77.859   High
cufflinks 3.12655 0.0 12.7271    
cufflinks 2.9559 0.0 12.4836    
cufflinks 11.8639 0.0 41.9863   High
cufflinks 5.18068 0.0 23.4518    
cufflinks 5.92761 0.0 22.6488    
cufflinks 3.47393 0.0 16.774    
cufflinks 5.94142 0.0 25.3732    
cufflinks 2.02217 0.0 8.83059   Low
cufflinks 9.9121 0.0 39.7247    
cufflinks 5.71108 0.0 24.7008    

0 Strain