Gene : Phvul.003G250300 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  2548
Name:  ? Phvul.003G250300 Secondary Identifier:  ? PAC:37147273
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G250300 0.5kb upstream 0.5kb upstream 5007 true Chr03: 48837628-48842634 Phaseolus vulgaris
Phvul.003G250300 0.5kb upstream 0.5kb upstream 500 false Chr03: 48837628-48838127 Phaseolus vulgaris
Phvul.003G250300 0.5kb downstream 0.5kb downstream 5007 true Chr03: 48838128-48843134 Phaseolus vulgaris
Phvul.003G250300 0.5kb downstream 0.5kb downstream 500 false Chr03: 48842635-48843134 Phaseolus vulgaris
Phvul.003G250300 1.0kb upstream 1.0kb upstream 5507 true Chr03: 48837128-48842634 Phaseolus vulgaris
Phvul.003G250300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 48837128-48838127 Phaseolus vulgaris
Phvul.003G250300 1.0kb downstream 1.0kb downstream 5507 true Chr03: 48838128-48843634 Phaseolus vulgaris
Phvul.003G250300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 48842635-48843634 Phaseolus vulgaris
Phvul.003G250300 2.0kb upstream 2.0kb upstream 6507 true Chr03: 48836128-48842634 Phaseolus vulgaris
Phvul.003G250300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 48836128-48838127 Phaseolus vulgaris
Phvul.003G250300 2.0kb downstream 2.0kb downstream 6507 true Chr03: 48838128-48844634 Phaseolus vulgaris
Phvul.003G250300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 48842635-48844634 Phaseolus vulgaris
Phvul.003G250300 5.0kb upstream 5.0kb upstream 9507 true Chr03: 48833128-48842634 Phaseolus vulgaris
Phvul.003G250300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 48833128-48838127 Phaseolus vulgaris
Phvul.003G250300 5.0kb downstream 5.0kb downstream 9507 true Chr03: 48838128-48847634 Phaseolus vulgaris
Phvul.003G250300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 48842635-48847634 Phaseolus vulgaris
Phvul.003G250300 10.0kb upstream 10.0kb upstream 14507 true Chr03: 48828128-48842634 Phaseolus vulgaris
Phvul.003G250300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 48828128-48838127 Phaseolus vulgaris
Phvul.003G250300 10.0kb downstream 10.0kb downstream 14507 true Chr03: 48838128-48852634 Phaseolus vulgaris
Phvul.003G250300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 48842635-48852634 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309087 5265 Fabidae View MSA
124068279 5270 Rosid View MSA
123741422 5271 Pentapetalae View MSA
122786539 5272 Eudicot View MSA
122041629 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121309872 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.03156 0.0 7.37784    
cufflinks 3.34451 0.0 11.5747   High
cufflinks 0.781975 0.0 3.06669   Low
cufflinks 2.05832 0.0 7.47271    
cufflinks 1.75234 0.0 6.49091    
cufflinks 1.3548 0.0 5.09634    
cufflinks 2.38527 0.0 8.5271    
cufflinks 2.3531 0.0 8.41981    
cufflinks 1.86735 0.0 6.82581    
cufflinks 0.891774 0.0 3.4797   Low
cufflinks 3.12831 0.0 10.9183   High

0 Strain