Gene : Phvul.007G020000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13452//PTHR13452:SF9 - THUMP DOMAIN CONTAINING PROTEIN 1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  197
Name:  ? Phvul.007G020000 Secondary Identifier:  ? PAC:37165450
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G020000 0.5kb upstream 0.5kb upstream 5574 true Chr07: 1388835-1394408 Phaseolus vulgaris
Phvul.007G020000 0.5kb upstream 0.5kb upstream 500 false Chr07: 1393909-1394408 Phaseolus vulgaris
Phvul.007G020000 0.5kb downstream 0.5kb downstream 5574 true Chr07: 1388335-1393908 Phaseolus vulgaris
Phvul.007G020000 0.5kb downstream 0.5kb downstream 500 false Chr07: 1388335-1388834 Phaseolus vulgaris
Phvul.007G020000 1.0kb upstream 1.0kb upstream 6074 true Chr07: 1388835-1394908 Phaseolus vulgaris
Phvul.007G020000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1393909-1394908 Phaseolus vulgaris
Phvul.007G020000 1.0kb downstream 1.0kb downstream 6074 true Chr07: 1387835-1393908 Phaseolus vulgaris
Phvul.007G020000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1387835-1388834 Phaseolus vulgaris
Phvul.007G020000 2.0kb upstream 2.0kb upstream 7074 true Chr07: 1388835-1395908 Phaseolus vulgaris
Phvul.007G020000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1393909-1395908 Phaseolus vulgaris
Phvul.007G020000 2.0kb downstream 2.0kb downstream 7074 true Chr07: 1386835-1393908 Phaseolus vulgaris
Phvul.007G020000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1386835-1388834 Phaseolus vulgaris
Phvul.007G020000 5.0kb upstream 5.0kb upstream 10074 true Chr07: 1388835-1398908 Phaseolus vulgaris
Phvul.007G020000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1393909-1398908 Phaseolus vulgaris
Phvul.007G020000 5.0kb downstream 5.0kb downstream 10074 true Chr07: 1383835-1393908 Phaseolus vulgaris
Phvul.007G020000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1383835-1388834 Phaseolus vulgaris
Phvul.007G020000 10.0kb upstream 10.0kb upstream 15074 true Chr07: 1388835-1403908 Phaseolus vulgaris
Phvul.007G020000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1393909-1403908 Phaseolus vulgaris
Phvul.007G020000 10.0kb downstream 10.0kb downstream 15074 true Chr07: 1378835-1393908 Phaseolus vulgaris
Phvul.007G020000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1378835-1388834 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299429 5265 Fabidae View MSA
124066599 5270 Rosid View MSA
123741347 5271 Pentapetalae View MSA
122792155 5272 Eudicot View MSA
122045801 5273 Angiosperm View MSA
121345171 5274 Embryophyte View MSA
123380169 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.77366 0.0 23.5003    
cufflinks 6.01268 0.0 27.2451   High
cufflinks 5.57426 0.0 25.9152   High
cufflinks 3.08926 0.0 13.6762   Low
cufflinks 3.77448 0.0 15.9284    
cufflinks 4.73351 0.0 17.4802    
cufflinks 3.72657 0.0 19.0552    
cufflinks 5.96293 0.0 29.4931   High
cufflinks 2.98923 0.0 13.6783   Low
cufflinks 4.52599 0.0 21.8458    
cufflinks 3.94085 0.0 19.9512    

0 Strain