Gene : Phvul.004G071500 P. vulgaris v2.1
Defline:  (1 of 1) K08907 - light-harvesting complex I chlorophyll a/b binding protein 1 (LHCA1) Genomic Order:  750
Name:  ? Phvul.004G071500 Secondary Identifier:  ? PAC:37162273
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G071500 0.5kb upstream 0.5kb upstream 2721 true Chr04: 11281561-11284281 Phaseolus vulgaris
Phvul.004G071500 0.5kb upstream 0.5kb upstream 500 false Chr04: 11283782-11284281 Phaseolus vulgaris
Phvul.004G071500 0.5kb downstream 0.5kb downstream 2721 true Chr04: 11281061-11283781 Phaseolus vulgaris
Phvul.004G071500 0.5kb downstream 0.5kb downstream 500 false Chr04: 11281061-11281560 Phaseolus vulgaris
Phvul.004G071500 1.0kb upstream 1.0kb upstream 3221 true Chr04: 11281561-11284781 Phaseolus vulgaris
Phvul.004G071500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 11283782-11284781 Phaseolus vulgaris
Phvul.004G071500 1.0kb downstream 1.0kb downstream 3221 true Chr04: 11280561-11283781 Phaseolus vulgaris
Phvul.004G071500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 11280561-11281560 Phaseolus vulgaris
Phvul.004G071500 2.0kb upstream 2.0kb upstream 4221 true Chr04: 11281561-11285781 Phaseolus vulgaris
Phvul.004G071500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 11283782-11285781 Phaseolus vulgaris
Phvul.004G071500 2.0kb downstream 2.0kb downstream 4221 true Chr04: 11279561-11283781 Phaseolus vulgaris
Phvul.004G071500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 11279561-11281560 Phaseolus vulgaris
Phvul.004G071500 5.0kb upstream 5.0kb upstream 7221 true Chr04: 11281561-11288781 Phaseolus vulgaris
Phvul.004G071500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 11283782-11288781 Phaseolus vulgaris
Phvul.004G071500 5.0kb downstream 5.0kb downstream 7221 true Chr04: 11276561-11283781 Phaseolus vulgaris
Phvul.004G071500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 11276561-11281560 Phaseolus vulgaris
Phvul.004G071500 10.0kb upstream 10.0kb upstream 12221 true Chr04: 11281561-11293781 Phaseolus vulgaris
Phvul.004G071500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 11283782-11293781 Phaseolus vulgaris
Phvul.004G071500 10.0kb downstream 10.0kb downstream 12221 true Chr04: 11271561-11283781 Phaseolus vulgaris
Phvul.004G071500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 11271561-11281560 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301540 5265 Fabidae View MSA
124067443 5270 Rosid View MSA
123742778 5271 Pentapetalae View MSA
122793443 5272 Eudicot View MSA
122044861 5273 Angiosperm View MSA
121344658 5274 Embryophyte View MSA
123424228 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 314.787 0.0 940.791 High  
cufflinks 538.692 0.0 1757.31 High  
cufflinks 4680.85 0.0 27225.2 High High
cufflinks 229.795 0.0 657.529 High  
cufflinks 474.094 0.0 1504.56 High  
cufflinks 1851.78 0.0 8231.25 High  
cufflinks 0.679239 0.0 2.57242   Low
cufflinks 0.179821 0.0 0.758197 Low Low
cufflinks 1.31343 0.0 4.7041   Low
cufflinks 252.398 0.0 727.821 High  
cufflinks 292.898 0.0 861.345 High  

0 Strain