Gene : Phvul.007G020500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23084:SF119 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 Genomic Order:  202
Name:  ? Phvul.007G020500 Secondary Identifier:  ? PAC:37165460
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G020500 0.5kb upstream 0.5kb upstream 12005 true Chr07: 1430204-1442208 Phaseolus vulgaris
Phvul.007G020500 0.5kb upstream 0.5kb upstream 500 false Chr07: 1441709-1442208 Phaseolus vulgaris
Phvul.007G020500 0.5kb downstream 0.5kb downstream 12005 true Chr07: 1429704-1441708 Phaseolus vulgaris
Phvul.007G020500 0.5kb downstream 0.5kb downstream 500 false Chr07: 1429704-1430203 Phaseolus vulgaris
Phvul.007G020500 1.0kb upstream 1.0kb upstream 12505 true Chr07: 1430204-1442708 Phaseolus vulgaris
Phvul.007G020500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1441709-1442708 Phaseolus vulgaris
Phvul.007G020500 1.0kb downstream 1.0kb downstream 12505 true Chr07: 1429204-1441708 Phaseolus vulgaris
Phvul.007G020500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1429204-1430203 Phaseolus vulgaris
Phvul.007G020500 2.0kb upstream 2.0kb upstream 13505 true Chr07: 1430204-1443708 Phaseolus vulgaris
Phvul.007G020500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1441709-1443708 Phaseolus vulgaris
Phvul.007G020500 2.0kb downstream 2.0kb downstream 13505 true Chr07: 1428204-1441708 Phaseolus vulgaris
Phvul.007G020500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1428204-1430203 Phaseolus vulgaris
Phvul.007G020500 5.0kb upstream 5.0kb upstream 16505 true Chr07: 1430204-1446708 Phaseolus vulgaris
Phvul.007G020500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1441709-1446708 Phaseolus vulgaris
Phvul.007G020500 5.0kb downstream 5.0kb downstream 16505 true Chr07: 1425204-1441708 Phaseolus vulgaris
Phvul.007G020500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1425204-1430203 Phaseolus vulgaris
Phvul.007G020500 10.0kb upstream 10.0kb upstream 21505 true Chr07: 1430204-1451708 Phaseolus vulgaris
Phvul.007G020500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1441709-1451708 Phaseolus vulgaris
Phvul.007G020500 10.0kb downstream 10.0kb downstream 21505 true Chr07: 1420204-1441708 Phaseolus vulgaris
Phvul.007G020500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1420204-1430203 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303924 5265 Fabidae View MSA
124066570 5270 Rosid View MSA
123740102 5271 Pentapetalae View MSA
122787208 5272 Eudicot View MSA
122045531 5273 Angiosperm View MSA
121346964 5274 Embryophyte View MSA
123427675 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.08075 0.0 15.299    
cufflinks 5.58522 0.0 19.6676    
cufflinks 8.89036 0.0 29.2513   High
cufflinks 3.52771 0.0 12.0528    
cufflinks 5.3509 0.0 19.366    
cufflinks 5.09222 0.0 18.2123    
cufflinks 3.30073 0.0 12.9328    
cufflinks 5.26424 0.0 18.5556    
cufflinks 3.10054 0.0 12.3734   Low
cufflinks 11.0094 0.0 35.4425   High
cufflinks 3.6574 0.0 14.3258    

0 Strain