Gene : Phvul.007G006000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13711:SF213 - PROTEIN HMG-20 Genomic Order:  57
Name:  ? Phvul.007G006000 Secondary Identifier:  ? PAC:37166522
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G006000 0.5kb upstream 0.5kb upstream 4820 true Chr07: 450945-455764 Phaseolus vulgaris
Phvul.007G006000 0.5kb upstream 0.5kb upstream 500 false Chr07: 455265-455764 Phaseolus vulgaris
Phvul.007G006000 0.5kb downstream 0.5kb downstream 4820 true Chr07: 450445-455264 Phaseolus vulgaris
Phvul.007G006000 0.5kb downstream 0.5kb downstream 500 false Chr07: 450445-450944 Phaseolus vulgaris
Phvul.007G006000 1.0kb upstream 1.0kb upstream 5320 true Chr07: 450945-456264 Phaseolus vulgaris
Phvul.007G006000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 455265-456264 Phaseolus vulgaris
Phvul.007G006000 1.0kb downstream 1.0kb downstream 5320 true Chr07: 449945-455264 Phaseolus vulgaris
Phvul.007G006000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 449945-450944 Phaseolus vulgaris
Phvul.007G006000 2.0kb upstream 2.0kb upstream 6320 true Chr07: 450945-457264 Phaseolus vulgaris
Phvul.007G006000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 455265-457264 Phaseolus vulgaris
Phvul.007G006000 2.0kb downstream 2.0kb downstream 6320 true Chr07: 448945-455264 Phaseolus vulgaris
Phvul.007G006000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 448945-450944 Phaseolus vulgaris
Phvul.007G006000 5.0kb upstream 5.0kb upstream 9320 true Chr07: 450945-460264 Phaseolus vulgaris
Phvul.007G006000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 455265-460264 Phaseolus vulgaris
Phvul.007G006000 5.0kb downstream 5.0kb downstream 9320 true Chr07: 445945-455264 Phaseolus vulgaris
Phvul.007G006000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 445945-450944 Phaseolus vulgaris
Phvul.007G006000 10.0kb upstream 10.0kb upstream 14320 true Chr07: 450945-465264 Phaseolus vulgaris
Phvul.007G006000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 455265-465264 Phaseolus vulgaris
Phvul.007G006000 10.0kb downstream 10.0kb downstream 14320 true Chr07: 440945-455264 Phaseolus vulgaris
Phvul.007G006000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 440945-450944 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301082 5265 Fabidae View MSA
124071278 5270 Rosid View MSA
123745117 5271 Pentapetalae View MSA
122793766 5272 Eudicot View MSA
122048952 5273 Angiosperm View MSA
121343849 5274 Embryophyte View MSA
123424352 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.809347 0.0 3.33449    
cufflinks 2.21392 0.0 10.2064    
cufflinks 10.7092 0.0 37.2205   High
cufflinks 0.714237 0.0 3.06988    
cufflinks 0.748989 0.0 3.24183    
cufflinks 5.00967 0.0 17.6476   High
cufflinks 0.554537 0.0 2.44077 Low  
cufflinks 0.745589 0.0 4.34567    
cufflinks 0.348252 0.0 1.62829 Low Low
cufflinks 6.10737 0.0 23.6065   High
cufflinks 0.537227 0.0 2.37532 Low  

0 Strain