Gene : Phvul.007G011400 P. vulgaris v2.1
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  111
Name:  ? Phvul.007G011400 Secondary Identifier:  ? PAC:37164285
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5084 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G011400 0.5kb upstream 0.5kb upstream 5818 true Chr07: 811835-817652 Phaseolus vulgaris
Phvul.007G011400 0.5kb upstream 0.5kb upstream 500 false Chr07: 817153-817652 Phaseolus vulgaris
Phvul.007G011400 0.5kb downstream 0.5kb downstream 5818 true Chr07: 811335-817152 Phaseolus vulgaris
Phvul.007G011400 0.5kb downstream 0.5kb downstream 500 false Chr07: 811335-811834 Phaseolus vulgaris
Phvul.007G011400 1.0kb upstream 1.0kb upstream 6318 true Chr07: 811835-818152 Phaseolus vulgaris
Phvul.007G011400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 817153-818152 Phaseolus vulgaris
Phvul.007G011400 1.0kb downstream 1.0kb downstream 6318 true Chr07: 810835-817152 Phaseolus vulgaris
Phvul.007G011400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 810835-811834 Phaseolus vulgaris
Phvul.007G011400 2.0kb upstream 2.0kb upstream 7318 true Chr07: 811835-819152 Phaseolus vulgaris
Phvul.007G011400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 817153-819152 Phaseolus vulgaris
Phvul.007G011400 2.0kb downstream 2.0kb downstream 7318 true Chr07: 809835-817152 Phaseolus vulgaris
Phvul.007G011400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 809835-811834 Phaseolus vulgaris
Phvul.007G011400 5.0kb upstream 5.0kb upstream 10318 true Chr07: 811835-822152 Phaseolus vulgaris
Phvul.007G011400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 817153-822152 Phaseolus vulgaris
Phvul.007G011400 5.0kb downstream 5.0kb downstream 10318 true Chr07: 806835-817152 Phaseolus vulgaris
Phvul.007G011400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 806835-811834 Phaseolus vulgaris
Phvul.007G011400 10.0kb upstream 10.0kb upstream 15318 true Chr07: 811835-827152 Phaseolus vulgaris
Phvul.007G011400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 817153-827152 Phaseolus vulgaris
Phvul.007G011400 10.0kb downstream 10.0kb downstream 15318 true Chr07: 801835-817152 Phaseolus vulgaris
Phvul.007G011400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 801835-811834 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311789 5265 Fabidae View MSA
124067534 5270 Rosid View MSA
123744941 5271 Pentapetalae View MSA
122793820 5272 Eudicot View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.653471 0.0 2.1202    
cufflinks 3.84337 0.0 10.3784   High
cufflinks 1.07505 0.0 3.28989    
cufflinks 0.7698 0.0 2.48423    
cufflinks 2.29594 0.0 6.53248   High
cufflinks 0.465703 0.0 1.57201 Low Low
cufflinks 1.00144 0.0 3.10129    
cufflinks 0.468257 0.0 1.5718   Low
cufflinks 0.731387 0.0 2.35587    
cufflinks 2.43914 0.0 6.86503   High
cufflinks 1.72109 0.0 5.04166    

0 Strain