Gene : Phvul.004G065300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11406//PTHR11406:SF13 - PHOSPHOGLYCERATE KINASE // SUBFAMILY NOT NAMED Genomic Order:  687
Name:  ? Phvul.004G065300 Secondary Identifier:  ? PAC:37162783
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris ANAGLYCOLYSIS-PWY Phaseolus vulgaris pathologic  
Pvulgaris CALVIN-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PHOTOALL-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-1042 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris SUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G065300 0.5kb upstream 0.5kb upstream 11248 true Chr04: 9617694-9628941 Phaseolus vulgaris
Phvul.004G065300 0.5kb upstream 0.5kb upstream 500 false Chr04: 9617694-9618193 Phaseolus vulgaris
Phvul.004G065300 0.5kb downstream 0.5kb downstream 11248 true Chr04: 9618194-9629441 Phaseolus vulgaris
Phvul.004G065300 0.5kb downstream 0.5kb downstream 500 false Chr04: 9628942-9629441 Phaseolus vulgaris
Phvul.004G065300 1.0kb upstream 1.0kb upstream 11748 true Chr04: 9617194-9628941 Phaseolus vulgaris
Phvul.004G065300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 9617194-9618193 Phaseolus vulgaris
Phvul.004G065300 1.0kb downstream 1.0kb downstream 11748 true Chr04: 9618194-9629941 Phaseolus vulgaris
Phvul.004G065300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 9628942-9629941 Phaseolus vulgaris
Phvul.004G065300 2.0kb upstream 2.0kb upstream 12748 true Chr04: 9616194-9628941 Phaseolus vulgaris
Phvul.004G065300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 9616194-9618193 Phaseolus vulgaris
Phvul.004G065300 2.0kb downstream 2.0kb downstream 12748 true Chr04: 9618194-9630941 Phaseolus vulgaris
Phvul.004G065300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 9628942-9630941 Phaseolus vulgaris
Phvul.004G065300 5.0kb upstream 5.0kb upstream 15748 true Chr04: 9613194-9628941 Phaseolus vulgaris
Phvul.004G065300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 9613194-9618193 Phaseolus vulgaris
Phvul.004G065300 5.0kb downstream 5.0kb downstream 15748 true Chr04: 9618194-9633941 Phaseolus vulgaris
Phvul.004G065300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 9628942-9633941 Phaseolus vulgaris
Phvul.004G065300 10.0kb upstream 10.0kb upstream 20748 true Chr04: 9608194-9628941 Phaseolus vulgaris
Phvul.004G065300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 9608194-9618193 Phaseolus vulgaris
Phvul.004G065300 10.0kb downstream 10.0kb downstream 20748 true Chr04: 9618194-9638941 Phaseolus vulgaris
Phvul.004G065300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 9628942-9638941 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299755 5265 Fabidae View MSA
124069828 5270 Rosid View MSA
123742375 5271 Pentapetalae View MSA
122794772 5272 Eudicot View MSA
122048515 5273 Angiosperm View MSA
121310998 5274 Embryophyte View MSA
123425871 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.643888 0.0 3.89458    
cufflinks 0.915459 0.0 5.80876    
cufflinks 3.5066 0.0 15.3079   High
cufflinks 0.398758 0.0 1.87524 Low Low
cufflinks 0.830924 0.0 4.31831    
cufflinks 3.2633 0.0 16.2042   High
cufflinks 1.17208 0.0 5.52001    
cufflinks 1.49221 0.0 6.38639    
cufflinks 0.668727 0.0 3.65423    
cufflinks 1.53078 0.0 9.40599    
cufflinks 0.662651 0.0 4.717    

0 Strain