Gene : Phvul.007G015700 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  154
Name:  ? Phvul.007G015700 Secondary Identifier:  ? PAC:37167244
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G015700 0.5kb upstream 0.5kb upstream 3355 true Chr07: 1067835-1071189 Phaseolus vulgaris
Phvul.007G015700 0.5kb upstream 0.5kb upstream 500 false Chr07: 1067835-1068334 Phaseolus vulgaris
Phvul.007G015700 0.5kb downstream 0.5kb downstream 3355 true Chr07: 1068335-1071689 Phaseolus vulgaris
Phvul.007G015700 0.5kb downstream 0.5kb downstream 500 false Chr07: 1071190-1071689 Phaseolus vulgaris
Phvul.007G015700 1.0kb upstream 1.0kb upstream 3855 true Chr07: 1067335-1071189 Phaseolus vulgaris
Phvul.007G015700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1067335-1068334 Phaseolus vulgaris
Phvul.007G015700 1.0kb downstream 1.0kb downstream 3855 true Chr07: 1068335-1072189 Phaseolus vulgaris
Phvul.007G015700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1071190-1072189 Phaseolus vulgaris
Phvul.007G015700 2.0kb upstream 2.0kb upstream 4855 true Chr07: 1066335-1071189 Phaseolus vulgaris
Phvul.007G015700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1066335-1068334 Phaseolus vulgaris
Phvul.007G015700 2.0kb downstream 2.0kb downstream 4855 true Chr07: 1068335-1073189 Phaseolus vulgaris
Phvul.007G015700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1071190-1073189 Phaseolus vulgaris
Phvul.007G015700 5.0kb upstream 5.0kb upstream 7855 true Chr07: 1063335-1071189 Phaseolus vulgaris
Phvul.007G015700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1063335-1068334 Phaseolus vulgaris
Phvul.007G015700 5.0kb downstream 5.0kb downstream 7855 true Chr07: 1068335-1076189 Phaseolus vulgaris
Phvul.007G015700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1071190-1076189 Phaseolus vulgaris
Phvul.007G015700 10.0kb upstream 10.0kb upstream 12855 true Chr07: 1058335-1071189 Phaseolus vulgaris
Phvul.007G015700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1058335-1068334 Phaseolus vulgaris
Phvul.007G015700 10.0kb downstream 10.0kb downstream 12855 true Chr07: 1068335-1081189 Phaseolus vulgaris
Phvul.007G015700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1071190-1081189 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302830 5265 Fabidae View MSA
124063102 5270 Rosid View MSA
123740388 5271 Pentapetalae View MSA
122790856 5272 Eudicot View MSA
122046765 5273 Angiosperm View MSA
121310656 5274 Embryophyte View MSA
123348085 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.02082 0.0 3.27995   Low
cufflinks 2.04599 0.0 6.08653    
cufflinks 2.91163 0.0 8.31693   High
cufflinks 1.46131 0.0 4.55175    
cufflinks 1.66627 0.0 5.07656    
cufflinks 2.61854 0.0 7.57996   High
cufflinks 1.47835 0.0 4.54848    
cufflinks 1.57815 0.0 4.82476    
cufflinks 1.78069 0.0 5.39225    
cufflinks 1.6045 0.0 4.90781    
cufflinks 1.71546 0.0 5.20521    

0 Strain