Gene : Phvul.004G053100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23089:SF12 - HIS TRIAD FAMILY PROTEIN 3 Genomic Order:  564
Name:  ? Phvul.004G053100 Secondary Identifier:  ? PAC:37162927
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G053100 0.5kb upstream 0.5kb upstream 4582 true Chr04: 7042257-7046838 Phaseolus vulgaris
Phvul.004G053100 0.5kb upstream 0.5kb upstream 500 false Chr04: 7046339-7046838 Phaseolus vulgaris
Phvul.004G053100 0.5kb downstream 0.5kb downstream 4582 true Chr04: 7041757-7046338 Phaseolus vulgaris
Phvul.004G053100 0.5kb downstream 0.5kb downstream 500 false Chr04: 7041757-7042256 Phaseolus vulgaris
Phvul.004G053100 1.0kb upstream 1.0kb upstream 5082 true Chr04: 7042257-7047338 Phaseolus vulgaris
Phvul.004G053100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7046339-7047338 Phaseolus vulgaris
Phvul.004G053100 1.0kb downstream 1.0kb downstream 5082 true Chr04: 7041257-7046338 Phaseolus vulgaris
Phvul.004G053100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7041257-7042256 Phaseolus vulgaris
Phvul.004G053100 2.0kb upstream 2.0kb upstream 6082 true Chr04: 7042257-7048338 Phaseolus vulgaris
Phvul.004G053100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7046339-7048338 Phaseolus vulgaris
Phvul.004G053100 2.0kb downstream 2.0kb downstream 6082 true Chr04: 7040257-7046338 Phaseolus vulgaris
Phvul.004G053100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7040257-7042256 Phaseolus vulgaris
Phvul.004G053100 5.0kb upstream 5.0kb upstream 9082 true Chr04: 7042257-7051338 Phaseolus vulgaris
Phvul.004G053100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7046339-7051338 Phaseolus vulgaris
Phvul.004G053100 5.0kb downstream 5.0kb downstream 9082 true Chr04: 7037257-7046338 Phaseolus vulgaris
Phvul.004G053100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7037257-7042256 Phaseolus vulgaris
Phvul.004G053100 10.0kb upstream 10.0kb upstream 14082 true Chr04: 7042257-7056338 Phaseolus vulgaris
Phvul.004G053100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7046339-7056338 Phaseolus vulgaris
Phvul.004G053100 10.0kb downstream 10.0kb downstream 14082 true Chr04: 7032257-7046338 Phaseolus vulgaris
Phvul.004G053100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7032257-7042256 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307996 5265 Fabidae View MSA
124066707 5270 Rosid View MSA
123736753 5271 Pentapetalae View MSA
122786513 5272 Eudicot View MSA
122041956 5273 Angiosperm View MSA
121349409 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.4013 0.0 107.146 High  
cufflinks 47.2247 0.0 122.073 High High
cufflinks 28.1293 0.0 73.5718    
cufflinks 78.3643 0.0 204.105 High High
cufflinks 24.9443 0.0 66.0134    
cufflinks 19.4409 0.0 52.2075   Low
cufflinks 19.1692 0.0 51.6245   Low
cufflinks 25.1399 0.0 66.1834    
cufflinks 25.6637 0.0 67.7796    
cufflinks 25.8718 0.0 68.0983    
cufflinks 32.8581 0.0 85.681    

0 Strain