Gene : Phvul.004G053400 P. vulgaris v2.1
Defline:  (1 of 1) 1.1.99.2 - L-2-hydroxyglutarate dehydrogenase / L-alpha-hydroxyglutarate dehydrogenase Genomic Order:  567
Name:  ? Phvul.004G053400 Secondary Identifier:  ? PAC:37162124
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G053400 0.5kb upstream 0.5kb upstream 4808 true Chr04: 7069385-7074192 Phaseolus vulgaris
Phvul.004G053400 0.5kb upstream 0.5kb upstream 500 false Chr04: 7073693-7074192 Phaseolus vulgaris
Phvul.004G053400 0.5kb downstream 0.5kb downstream 4808 true Chr04: 7068885-7073692 Phaseolus vulgaris
Phvul.004G053400 0.5kb downstream 0.5kb downstream 500 false Chr04: 7068885-7069384 Phaseolus vulgaris
Phvul.004G053400 1.0kb upstream 1.0kb upstream 5308 true Chr04: 7069385-7074692 Phaseolus vulgaris
Phvul.004G053400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7073693-7074692 Phaseolus vulgaris
Phvul.004G053400 1.0kb downstream 1.0kb downstream 5308 true Chr04: 7068385-7073692 Phaseolus vulgaris
Phvul.004G053400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7068385-7069384 Phaseolus vulgaris
Phvul.004G053400 2.0kb upstream 2.0kb upstream 6308 true Chr04: 7069385-7075692 Phaseolus vulgaris
Phvul.004G053400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7073693-7075692 Phaseolus vulgaris
Phvul.004G053400 2.0kb downstream 2.0kb downstream 6308 true Chr04: 7067385-7073692 Phaseolus vulgaris
Phvul.004G053400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7067385-7069384 Phaseolus vulgaris
Phvul.004G053400 5.0kb upstream 5.0kb upstream 9308 true Chr04: 7069385-7078692 Phaseolus vulgaris
Phvul.004G053400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7073693-7078692 Phaseolus vulgaris
Phvul.004G053400 5.0kb downstream 5.0kb downstream 9308 true Chr04: 7064385-7073692 Phaseolus vulgaris
Phvul.004G053400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7064385-7069384 Phaseolus vulgaris
Phvul.004G053400 10.0kb upstream 10.0kb upstream 14308 true Chr04: 7069385-7083692 Phaseolus vulgaris
Phvul.004G053400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7073693-7083692 Phaseolus vulgaris
Phvul.004G053400 10.0kb downstream 10.0kb downstream 14308 true Chr04: 7059385-7073692 Phaseolus vulgaris
Phvul.004G053400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7059385-7069384 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303922 5265 Fabidae View MSA
124061450 5270 Rosid View MSA
123738460 5271 Pentapetalae View MSA
122792382 5272 Eudicot View MSA
122042852 5273 Angiosperm View MSA
121347258 5274 Embryophyte View MSA
123427019 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.26638 0.0 12.5985    
cufflinks 3.03748 0.0 9.33669    
cufflinks 4.29213 0.0 12.6379    
cufflinks 3.45632 0.0 10.5857    
cufflinks 2.05233 0.0 6.6583    
cufflinks 3.29068 0.0 10.0026    
cufflinks 2.8459 0.0 8.81328    
cufflinks 3.42613 0.0 10.3067    
cufflinks 2.40859 0.0 7.61874    
cufflinks 4.74116 0.0 13.89   High
cufflinks 1.24737 0.0 4.27111   Low

0 Strain