Gene : Phvul.007G004600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  44
Name:  ? Phvul.007G004600 Secondary Identifier:  ? PAC:37164690
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris BRANCHED-CHAIN-AA-SYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris LEUSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G004600 0.5kb upstream 0.5kb upstream 18842 true Chr07: 306330-325171 Phaseolus vulgaris
Phvul.007G004600 0.5kb upstream 0.5kb upstream 500 false Chr07: 324672-325171 Phaseolus vulgaris
Phvul.007G004600 0.5kb downstream 0.5kb downstream 18842 true Chr07: 305830-324671 Phaseolus vulgaris
Phvul.007G004600 0.5kb downstream 0.5kb downstream 500 false Chr07: 305830-306329 Phaseolus vulgaris
Phvul.007G004600 1.0kb upstream 1.0kb upstream 19342 true Chr07: 306330-325671 Phaseolus vulgaris
Phvul.007G004600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 324672-325671 Phaseolus vulgaris
Phvul.007G004600 1.0kb downstream 1.0kb downstream 19342 true Chr07: 305330-324671 Phaseolus vulgaris
Phvul.007G004600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 305330-306329 Phaseolus vulgaris
Phvul.007G004600 2.0kb upstream 2.0kb upstream 20342 true Chr07: 306330-326671 Phaseolus vulgaris
Phvul.007G004600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 324672-326671 Phaseolus vulgaris
Phvul.007G004600 2.0kb downstream 2.0kb downstream 20342 true Chr07: 304330-324671 Phaseolus vulgaris
Phvul.007G004600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 304330-306329 Phaseolus vulgaris
Phvul.007G004600 5.0kb upstream 5.0kb upstream 23342 true Chr07: 306330-329671 Phaseolus vulgaris
Phvul.007G004600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 324672-329671 Phaseolus vulgaris
Phvul.007G004600 5.0kb downstream 5.0kb downstream 23342 true Chr07: 301330-324671 Phaseolus vulgaris
Phvul.007G004600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 301330-306329 Phaseolus vulgaris
Phvul.007G004600 10.0kb upstream 10.0kb upstream 28342 true Chr07: 306330-334671 Phaseolus vulgaris
Phvul.007G004600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 324672-334671 Phaseolus vulgaris
Phvul.007G004600 10.0kb downstream 10.0kb downstream 28342 true Chr07: 296330-324671 Phaseolus vulgaris
Phvul.007G004600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 296330-306329 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305643 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.0071 0.0 95.3063    
cufflinks 56.5775 0.0 210.158 High High
cufflinks 40.1892 0.0 138.839 High  
cufflinks 30.9597 0.0 102.979    
cufflinks 31.9551 0.0 106.232    
cufflinks 45.1271 0.0 159.718 High  
cufflinks 21.3799 0.0 68.532   Low
cufflinks 50.296 0.0 182.155 High High
cufflinks 20.0363 0.0 63.9893   Low
cufflinks 47.123 0.0 168.725 High  
cufflinks 30.8384 0.0 102.303    

0 Strain