Gene : Phvul.004G055600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR21148:SF1 - PHOSDUCIN-LIKE PROTEIN 3 Genomic Order:  589
Name:  ? Phvul.004G055600 Secondary Identifier:  ? PAC:37161840
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G055600 0.5kb upstream 0.5kb upstream 3686 true Chr04: 7511961-7515646 Phaseolus vulgaris
Phvul.004G055600 0.5kb upstream 0.5kb upstream 500 false Chr04: 7515147-7515646 Phaseolus vulgaris
Phvul.004G055600 0.5kb downstream 0.5kb downstream 3686 true Chr04: 7511461-7515146 Phaseolus vulgaris
Phvul.004G055600 0.5kb downstream 0.5kb downstream 500 false Chr04: 7511461-7511960 Phaseolus vulgaris
Phvul.004G055600 1.0kb upstream 1.0kb upstream 4186 true Chr04: 7511961-7516146 Phaseolus vulgaris
Phvul.004G055600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7515147-7516146 Phaseolus vulgaris
Phvul.004G055600 1.0kb downstream 1.0kb downstream 4186 true Chr04: 7510961-7515146 Phaseolus vulgaris
Phvul.004G055600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7510961-7511960 Phaseolus vulgaris
Phvul.004G055600 2.0kb upstream 2.0kb upstream 5186 true Chr04: 7511961-7517146 Phaseolus vulgaris
Phvul.004G055600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7515147-7517146 Phaseolus vulgaris
Phvul.004G055600 2.0kb downstream 2.0kb downstream 5186 true Chr04: 7509961-7515146 Phaseolus vulgaris
Phvul.004G055600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7509961-7511960 Phaseolus vulgaris
Phvul.004G055600 5.0kb upstream 5.0kb upstream 8186 true Chr04: 7511961-7520146 Phaseolus vulgaris
Phvul.004G055600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7515147-7520146 Phaseolus vulgaris
Phvul.004G055600 5.0kb downstream 5.0kb downstream 8186 true Chr04: 7506961-7515146 Phaseolus vulgaris
Phvul.004G055600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7506961-7511960 Phaseolus vulgaris
Phvul.004G055600 10.0kb upstream 10.0kb upstream 13186 true Chr04: 7511961-7525146 Phaseolus vulgaris
Phvul.004G055600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7515147-7525146 Phaseolus vulgaris
Phvul.004G055600 10.0kb downstream 10.0kb downstream 13186 true Chr04: 7501961-7515146 Phaseolus vulgaris
Phvul.004G055600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7501961-7511960 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251723 5265 Fabidae Singleton cluster - no MSA
124063753 5270 Rosid View MSA
123741848 5271 Pentapetalae View MSA
122790335 5272 Eudicot View MSA
122042488 5273 Angiosperm View MSA
121344718 5274 Embryophyte View MSA
123424986 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.79755 0.0 22.6427    
cufflinks 5.47234 0.0 16.6168    
cufflinks 4.12719 0.0 12.8919    
cufflinks 12.1818 0.0 34.1433   High
cufflinks 6.45652 0.0 19.3549    
cufflinks 4.61817 0.0 14.2829    
cufflinks 7.43145 0.0 21.7668    
cufflinks 8.80997 0.0 25.257    
cufflinks 7.40285 0.0 21.7331    
cufflinks 2.58302 0.0 8.54418   Low
cufflinks 6.58012 0.0 19.6475    

0 Strain