Gene : Phvul.004G060400 P. vulgaris v2.1
Defline:  (1 of 466) PF13041 - PPR repeat family (PPR_2) Genomic Order:  635
Name:  ? Phvul.004G060400 Secondary Identifier:  ? PAC:37162944
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G060400 0.5kb upstream 0.5kb upstream 11946 true Chr04: 8462790-8474735 Phaseolus vulgaris
Phvul.004G060400 0.5kb upstream 0.5kb upstream 500 false Chr04: 8474236-8474735 Phaseolus vulgaris
Phvul.004G060400 0.5kb downstream 0.5kb downstream 11946 true Chr04: 8462290-8474235 Phaseolus vulgaris
Phvul.004G060400 0.5kb downstream 0.5kb downstream 500 false Chr04: 8462290-8462789 Phaseolus vulgaris
Phvul.004G060400 1.0kb upstream 1.0kb upstream 12446 true Chr04: 8462790-8475235 Phaseolus vulgaris
Phvul.004G060400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 8474236-8475235 Phaseolus vulgaris
Phvul.004G060400 1.0kb downstream 1.0kb downstream 12446 true Chr04: 8461790-8474235 Phaseolus vulgaris
Phvul.004G060400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 8461790-8462789 Phaseolus vulgaris
Phvul.004G060400 2.0kb upstream 2.0kb upstream 13446 true Chr04: 8462790-8476235 Phaseolus vulgaris
Phvul.004G060400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 8474236-8476235 Phaseolus vulgaris
Phvul.004G060400 2.0kb downstream 2.0kb downstream 13446 true Chr04: 8460790-8474235 Phaseolus vulgaris
Phvul.004G060400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 8460790-8462789 Phaseolus vulgaris
Phvul.004G060400 5.0kb upstream 5.0kb upstream 16446 true Chr04: 8462790-8479235 Phaseolus vulgaris
Phvul.004G060400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 8474236-8479235 Phaseolus vulgaris
Phvul.004G060400 5.0kb downstream 5.0kb downstream 16446 true Chr04: 8457790-8474235 Phaseolus vulgaris
Phvul.004G060400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 8457790-8462789 Phaseolus vulgaris
Phvul.004G060400 10.0kb upstream 10.0kb upstream 21446 true Chr04: 8462790-8484235 Phaseolus vulgaris
Phvul.004G060400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 8474236-8484235 Phaseolus vulgaris
Phvul.004G060400 10.0kb downstream 10.0kb downstream 21446 true Chr04: 8452790-8474235 Phaseolus vulgaris
Phvul.004G060400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 8452790-8462789 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305765 5265 Fabidae View MSA
124067995 5270 Rosid View MSA
123737960 5271 Pentapetalae View MSA
122786713 5272 Eudicot View MSA
122046332 5273 Angiosperm View MSA
121347677 5274 Embryophyte View MSA
123426917 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.81408 0.0 26.4555    
cufflinks 18.0129 0.0 46.8467   High
cufflinks 6.77862 0.0 18.8413   Low
cufflinks 18.1957 0.0 47.446   High
cufflinks 9.03642 0.0 24.7225    
cufflinks 9.24754 0.0 25.0737    
cufflinks 12.205 0.0 32.456    
cufflinks 16.8798 0.0 43.9722   High
cufflinks 14.9673 0.0 39.3128    
cufflinks 7.47319 0.0 20.6878   Low
cufflinks 11.0493 0.0 29.7096    

0 Strain